Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61310 114 / 1e-25 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 110 / 2e-24 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 107 / 2e-23 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61300 105 / 8e-23 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 104 / 1e-22 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 103 / 2e-22 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 100 / 2e-21 RFL1 RPS5-like 1 (.1) AT1G12280 99 / 5e-21 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G05400 98 / 1e-20 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G63350 98 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G427210 [exp] 1095 / 0 ND / Potri.001G429430 [exp] 889 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 838 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 663 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G434000 [exp] 624 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 624 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 541 / 5e-172 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433700 [exp] 514 / 9e-171 AT4G27190 243 / 7e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426660 [exp] 526 / 4e-170 AT4G27220 238 / 3e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002247 [exp] 59 / 2e-08 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006794 [exp] 58 / 3e-08 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 58 / 5e-08 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 57 / 7e-08 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 57 / 8e-08 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020533 [exp] 57 / 8e-08 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10002249 [exp] 57 / 9e-08 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039540 [exp] 57 / 1e-07 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 56 / 3e-07 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 55 / 3e-07 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G426030.1 pacid=42788769 polypeptide=Potri.001G426030.1.p locus=Potri.001G426030 ID=Potri.001G426030.1.v4.1 annot-version=v4.1 ATGGCTCTCGAAAGTGCTGGTGGATCCATTATAGCTATGCTAGCAGAACTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGCTCAAGAATTCAAAGAACAAAAGGAGAACCTGGTTTCGGCAAAAGAACGTCTGCAAGACGATGTCGAAGCTGCTGAAAGGAATGCTGAAAAAAC TTACAGAGATGTCAAAAAGTGGCTGGAAGATGCAAACAACCAAATTGAAGGTGCGAAGCCCTTGGAAAATGAAATAGGAAAAAACGGCAAATGCTTTACT TGGTGCCCAAACTGCATGCGACAATTCAAGTTAAGCAAGGCACTGGCCAAGAAGTCGGAGACTTTCAGAAAAATTCTAGAAAATAGCACAAAGTTTAAAA CAGTGGCCCAAAAAGCTCCTCCTCAGCCCATAGAATTTCTAACATCAAAGGAATTCACGCCCTCAGAATCGTCAAAAGAAGCTTTGGAACAGATCATGAA AGCTCTCAAAGATGACACCGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACAACCCTGGTGAAAGAAGTAGGCAGGAGAGCCAAAGAG TCGCAGCTTTTTCCTGACGTTTTGATGGCTACGGTGTCCCAGAATCCAAATTTCATAGGCATCCAGGATCGAATGGCAGATAGTTTACATCTGAAATTTG AAAAAACGAGTAAAGAAGGTAGAGCAAGTGAATTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAATCCTAGATGATGTTTGGAAACATATTGACTT GGAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTGTTCAAGGCATATGTTTTTCTATGGAGTGCCAGCAA AAAGTGCTTTTAAAAACTATCTTCATAAAAGAGTGTGGTAAACTGGAATATGTCTTCCCTGTCTCCATGTCTCCAAGCCTTCCGAACCTGGAACAGATGA CGATTTATTATGCTGACAATTTAAAGCAAATATTTTACAGTGGAGAAGGAGATGCACTCACCACAGATGGCATCATCAAGTTCCCTCAACTAAGAGAATT GTCTCTTGGGCTCCGATCAAATTACGGCTTTATAGGTCCAAGGAATTTTGATTTTCAATTGCCTTCTTTGCAGAATCTAAACATTAAAGGCCACGAAGAA GTGGGTAATTGGTTGGCACAGCTACAACAAAACGGCTTCTTACAAAGATTAGAAGCTGTACACATGAGGGATTGTGGGGATGTTCGCGCTCCATTTCCAG CAAAATTGCTGCGAGCTGTGAAAAATCTAAAGAAAGTGGGTGTTTGGTGCTGCAAATCTTTGGAAGAGGTATTTGAATTAGGTGAGGCTGATGAAGGAAG CAGTGAGGAGAAGGAGCTGCTGTCATCTTTAACAGAGTTACTGCTGTCAGGGTTACCTGAGCTCAAATGCATTTGGAAGGGGCCCACCAGACATGTCAGC CTCCAAAGTCTTGCTTATCTGTATTTGAATTCTCTCGACAAACTGACATTTATCCTCACACCGTCTCTCGCTCGAAGTCTGCCAAAGCTAGAAACACTTG AGATAAGTGAATGCGGTGAATTGAAGTATATTATCAGAGAAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCCTTGCTTCCCAAGATTAAAAACTAT CTTCATAAAAGACTGTGGTAAACTGGAATATGTCTTCCCTGTCTCTGTGTCTCCGAGCCTTCCGAACCTGGAATTGATGACGATTGATCGTACTGACAAT TTAAAGCAAATATTTTACAGTGGAGAAGGAGACGCACTCACCACAGATGGCATCATCAAGTTCCCTCGATTAAGTGACTTGGTTCTTTCTTCCATATCAA ATTACAGCTTTTTTGGTCCAACGAATCTTGCTGCCCAATTGCCTTCTTTGCGATTTCTAAAAATCAATGGCCACAAAGAATTGGGAAATTTGTTTGCACA GCTCCAAGGGTTCACAAATTTGAAAGAATTAAGCTTGGAATCCGTGCCTGACTTGAGGGGTCTTCTGCTGAGCAAATTGACTACTTTGGAGATGGCCGCC CATGGGGAGCAAAACGGCTCCTTACATAGATTAGAACGTGTACGAGTGGACGATTGTGGGGATGTTCGCGCTCCGTTTCCAGCAAAATTGCTGCGAGCTT TGAAAAATCTAAGCAGTGTGAACATTAACGGCTGCAAATCATTGGAAGAGGTATTTGAATTAGGTGAGCCTGATGAAGGAAGTAGGGAGGAGAAGGAGCT GCCGCTTCTGTCATCTTTAACAGGGTTACGGCTGTCAGGTTTACCTGAGCTCAAATGCATGTGGAAGGGGCCCACCAGACATGTCAGCCTCCAAAGTCTT GCTTATCTGGATTTGTGGTCTCTGGACAAACTGACATTTATATTCACACCGTCCCTCGCTCGAAGTCTGCCAAAGCTAGAAAGACTTTACATAGGTAAAT GCGGTCAATTGAAGCATATTATCAGAGAAGAGGATGGTGAAAAGGAAATAATTCCAGAGCCTCCTGGGCAGGATGGTCAAGCTTCACCTATCAACGTTGA GAAGGAGATAGTGCTTCCTAATCTAAAGGAGTTGTCGATACAACAATTATCAAGTATTGTCTGTTTTAGTTTCGGATGGTGTGATTATTTGTTATTCCCT CGTTTGGAGAAGTTGGAGGTCCATCTATGTCCAAAGCTGACCACAAAATTTGCTAGTACACCAGATGGTTCAATGAGTGCTCAATCAGAGGTATCTGAAG TAGCTGAAGATTCAAGCATTTATAGAGAGTGGACCCGAGATAAGGGGTGGAAAGAACGATGA
AA sequence Show only first row Show all	>Potri.001G426030.1 pacid=42788769 polypeptide=Potri.001G426030.1.p locus=Potri.001G426030 ID=Potri.001G426030.1.v4.1 annot-version=v4.1 MALESAGGSIIAMLAELMVEPVGRQFRYMFCFNNFAQEFKEQKENLVSAKERLQDDVEAAERNAEKTYRDVKKWLEDANNQIEGAKPLENEIGKNGKCFT WCPNCMRQFKLSKALAKKSETFRKILENSTKFKTVAQKAPPQPIEFLTSKEFTPSESSKEALEQIMKALKDDTVNMIGLYGMGGVGKTTLVKEVGRRAKE SQLFPDVLMATVSQNPNFIGIQDRMADSLHLKFEKTSKEGRASELWQRLQGKKMLIILDDVWKHIDLEEIGIPFGDDHRGCKILLTTRVQGICFSMECQQ KVLLKTIFIKECGKLEYVFPVSMSPSLPNLEQMTIYYADNLKQIFYSGEGDALTTDGIIKFPQLRELSLGLRSNYGFIGPRNFDFQLPSLQNLNIKGHEE VGNWLAQLQQNGFLQRLEAVHMRDCGDVRAPFPAKLLRAVKNLKKVGVWCCKSLEEVFELGEADEGSSEEKELLSSLTELLLSGLPELKCIWKGPTRHVS LQSLAYLYLNSLDKLTFILTPSLARSLPKLETLEISECGELKYIIREEDGEREIIPESPCFPRLKTIFIKDCGKLEYVFPVSVSPSLPNLELMTIDRTDN LKQIFYSGEGDALTTDGIIKFPRLSDLVLSSISNYSFFGPTNLAAQLPSLRFLKINGHKELGNLFAQLQGFTNLKELSLESVPDLRGLLLSKLTTLEMAA HGEQNGSLHRLERVRVDDCGDVRAPFPAKLLRALKNLSSVNINGCKSLEEVFELGEPDEGSREEKELPLLSSLTGLRLSGLPELKCMWKGPTRHVSLQSL AYLDLWSLDKLTFIFTPSLARSLPKLERLYIGKCGQLKHIIREEDGEKEIIPEPPGQDGQASPINVEKEIVLPNLKELSIQQLSSIVCFSFGWCDYLLFP RLEKLEVHLCPKLTTKFASTPDGSMSAQSEVSEVAEDSSIYREWTRDKGWKER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	0	1
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	1.73	0.9703
AT4G27220			NB-ARC domain-containing disea...		Potri.001G427440 [exp]	3.31	0.8946
					Potri.001G427210 [exp]	4.24	0.9222
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	12.24	0.8753
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	13.63	0.8588
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	17.14	0.9156
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	20.00	0.8850
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	20.37	0.8507
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	24.37	0.8258
					Potri.001G425600 [exp]	24.49	0.8602

Compare expression of checked genes

Potri.001G426030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.