Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 267 / 6e-74 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 226 / 8e-61 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61180 224 / 5e-60 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61310 217 / 1e-57 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 214 / 1e-56 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 213 / 1e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61300 211 / 2e-56 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 207 / 1e-54 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 206 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G434000 [exp] 2072 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 2013 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 1934 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 1818 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 1670 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 1659 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 1652 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444050 [exp] 1650 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 1598 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 112 / 8e-25 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10005218 [exp] 113 / 9e-25 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 113 / 1e-24 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 113 / 1e-24 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 110 / 5e-24 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 110 / 9e-24 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 109 / 1e-23 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 109 / 1e-23 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 109 / 2e-23 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10020016 [exp] 107 / 6e-23 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G426200.1 pacid=42787617 polypeptide=Potri.001G426200.1.p locus=Potri.001G426200 ID=Potri.001G426200.1.v4.1 annot-version=v4.1 ATGGCTATCGAAAGTGTGGGTGGATCCATTATATCTAAGATAGCAGAACTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGTTGAAGAATTCAAAGAACGAAAGGAGAATCTGTATTCGGCAAAAGAACGTCTGCAAAATATTGTCGAAGATGCTAAAACGAATGCTGAAGAAAT TGAAAAAGTTGTCAAAAAGTGGCTGGAAGATGCAAACAACGAGATTGAAGGTGTGAAGCCTTTGGAAAATGAAATAGGAAAAAATGGCAAATGCTTTACT TGGTGTCCGAACTGCATGCGACAATTCAAGTTAAGCAAGGCACTGGCCAATAAGTCGGAGACTCTCAGAAAACTTGAAGAAATTAGCGAAAAGTTTAAAA CGGTGTCCCACAAAGCTCATCTTCAGCCCATAGAATTTCTTCCATCAAAGGAATTCACGCCCTCAGAATCGTCAAAAGAAGCTTTGGAACAGATTATGAA AGCTCTCAAAGATGACAGTGTCAATATGATCGGACTGTACGGCATGGGAGGAGTGGGTAAAACCACCCTGGTGAAAGAAGTAGGCAGGAGAGCCAAAGAG TTGCAGCTTTTTCCTGAAGTTTTGATGGCTACGGTGTCCCAGAATCCAAATGTCACAGACATCCAGGATCGAATGGCAGATAAGTTACGTCTGGATATTA AAGAAAAGAGTAGAGAAGGGAGAGCAGATCGATTAAGGCATAGACTGAAGGAAGTGGAGAAGATGCTTATAATCCTAGATGATGTTTGGGAAGATATTGA CTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTTTTGAACACATATGTTCTTCTATGGAGTGCCAG CAAAAAGTGTTTTTAAGAGTCTTATCTGAAGATGAAGCATTGGCTTTATTCAGAATCAATGCAGGTTTACGTGATGGGGACTCTACCTTGAACACAGTGG CAAGGGAGGTTGCGAGAGAATGCCATGGCTTGCCTATAGCACTTGTGACAGTGGGAAGGGCTCTAAGAGATAAATCTCTAGTTCAGTGGGAAGTAGCGTC TAAACAGCTCAAAGACTCTCAATTTCCGCGCATGGAACAAATTGACAAACAAAAAAATGCTTATACATGTCTTAAGTTGAGCTATGATTATTTGAAGTTC GAGGAAACCAAGTCATGTTTCGTGCTATGCTGTTTATTTCCAGAAGACTATGATATTCCAATCGAGGACTTGACGAGATATGCAGTTGGCTATGGGTTAC ATCAAGATGCGGAGCCCATCGAAGATGCAAGGAAACGAGTTTTTGTGGCAATCGAAAACCTCAAAGATTGTTGCATGCTGTTGGGCACTGAAACTGGAGA ACATGTGAAAATGCATGACTTGGTTCGTGACTTTGCTATTCAGATAGCATCATCAGAAGAATATGGATTCATGGTAAAGGCTGGCATTGGGTTGCAGAAG TGGCCAATGAGCAATACAAGCTTTGAAGGTTGTACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCAAAGCTCA AAGTTCTATTATTAGAAGTGGATTATGGTTTGAATGTTCCTCAGAGGTGTTTTGAAGGGATGAGAGAAATTGAAGTTTTGTCTCTGAACGGAGGGCGTTT GTCATTGCAATCACTTGAACTATCAACGAAACTTCAATCGTTGGTGTTGATCATGTGTGGATGCAAGGACCTCATTTGGTTGAGAAAGCTGCAGAGACTT AAGATTCTTGGTCTTATGTGGTGCTTATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGATGTGACAGGTTGTGAAA GGCTAAGTAGGATTCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAATTGTTGATCGGGGATGGCAGCTTTGAGGAATGGGATGTTGTTGGATG TGACAGCACAGGAGGAATGAATGCAAGCCTAAAAGAACTAAATTCGTTGTCTCAGTTAGCTGTATTATCATTAAGGATACCGAAGGTGGAATGCATTCCC AGAGATTTTGTTTTTCCTAGCTTGCACAAATATGATATAGTATTAGGGAATCGGTTTGATGCAGGAGGATACCCAACCTCGACAAGATTAAATTTGGCTG GTACAAGCGCCACATCCTTAAATGTGATGACATTTGAGCTGTTGTTTCCTACGGTGTCCCAAATTGTTTTTACGAGTTTAGAGGGTTTAAAAAATATAGA ATTGCACTCTGATCACATGACCAACCATGGCCATGAGCCCCAAAAGGGCCTCTTACAGAGATTAGAATTCGTACAAGTGCAGCGTTGTGGGGATATTTGC ACTCTGTTTCCAGCAAAATTACGGCAAGCTTTGAAACATCTAAAGAAGGTGATTATTGACAGCTGCAAATCATTGGAAGAGGTATTTGAATTGGGTGAGG TTGATGAAGAAAGCAATGAGGAGAAAGAGATGCCGCTGCTATCATCTTTAACAATGTTAGAGCTGCAAGGGTTACCTGAGCTCAAATGCATATGGAAGGG GGCCACCAGACATGTCAGCCTTCAAAGTCTTGCTCATCTGAAGGTTTGGTCTCTCGACAAACTGACATTTATCTTCACACCGTCCCTCGCTCAAAGTCTA CCACAGCTAGAAACACTTGAGATAGAAAAATGCGGTGAATTGAAGCATATTATCAGAGAACAGGATGGTGAAAGGGAGATAATTCCAGAGTCTCCAGGCT TCCCAAAATTAAAAACTCTCCTTGTATCAGGATGTGGTAAACTGGAATATGTCTTCTCAGTCTCTATGTCTCCAAGTCTTCCGAACCTGGAACAGATGAC GATTTATTATGCTGACAATTTAAAGCAAATATTTTACGGTGGAGAAGGAGATGCACTTACCAGAGATGACATCATCAAGTTCCCTCAACTAAAAGAATTG TCTCTTCGGCTCGGATCAAATTACAGCTTTTTAGGTCCACAGAATTTTGCTGTCCAATTGCCTTCTTTGCAAAAACTAACCATTCATGGCCGCGAAGAAT TGGGTAATTGGTTGGCACAGCTACAACAAAAGGGCTTCTTACAAAGATTAAGATTTGTAGAAGTGAACGATTGTGGGGATGTTCGCACTCCGTTTCCAGC AAAATTGCTGCAAGCTTTGAAAAATCTAAGTAGTGTGGATATTGAGAGCTGTAAATCATTGGAAGAGGTATTTGAATTGGGTGAGGTTGATGAAGAAAGC AATGAGGAGAAGGAGCTGTCGCTACTGTCATCTTTAACAACGTTACTGCTGATCGACTTACCTGAGCTCAGATGTATATGGAAGGGGCCTACTAGGCATG TCAGCCTCCAAAATCTTGTTCATCTGAATTTGAATTCTCTCGACAAACTGACATTTATCTTCACACCATCCCTGGCTCAAAGTCTGCCAAAGCTAGCAAC CCTTGACATAAGATATTGCAGTGAATTGAAGCATATTATCAGAGAAAAGGATGATGAAAGGGAAATAATTTCAGAGTCTCTTCGCTTCCCAAGATTAAAA ACTATCTTCATAGAAGAGTGTGGTAAACTGGAATATGTCTTCCCTGTCTCTGTGTCTCCGAGTCTTCTGAACCTGGAAGAGATGGGGATTTTTTATGCTC ATAATTTAAAGCAAATATTTTACAGTGGAGAAGGAGATGCACTCACCACAGATGGCATCATCAAGTTCCCTCGACTAAGAAAATTGTCTCTTTCTTCCAG ATCAAATTTCAGCTTTTTTGGCCCTAAGAATTTTGCTGCCCAATTGCCTTCTTTGCAATGTCTAATCATTGATGGCCATGAAGAATTGGGTAATTTGTTG GCAAAGCTTCAAGAGTTGACAAGTTTGAAAACATTACGCCTGGGCTCCCTGCTTGTGCCTGACATGAGGTGTTTGTGGAAGGGTCTCGTGCTGAGCAATT TGACTACTTTGGTGGTGTATGAGTGTAAGAGACTAACACATGTATTCTCAGACAGCATGATTGCTAGTCTAGTTCAACTGAATTTTCTAAACATAGAAAG TTGTGAGGAATTAGAGCAAATCATTGCTAGGGATAATGATGATGGAAAGGATCAGATAGTGCCAGGAGATCATCTTCAATCTTTATGCTTCCCTAATTTA TGTGAAATTGATGTCAGAAAATGCAACAAGTTGAAATGTCTCTTCCCAGTAGGCATGGCTTCAGGTCTCCCAAATCTCCAAATACTGAAAGTAAGAGAAG CTTCTCAATTATTGGGAGTATTTGGACAGGAAGAGAATGCTTTACCTGTCAATGTTGAGAAGGTGATGGAGCTCCCGAATCTGCAGGTGCTGTTGCTAGA ACAATTATCAAGTATTGTATGCTTCAGTCTCGGATGTTATGATTTCTTATTCCCTCATTTAGAGAAGTTGAAGGTGTTTGAATGCCCAAAGCTGATCACA AAATTTGCTACTACACCAAATGGTTCAATAAGAGCTCAATCAGAGGTATCTGAAGTAGCTGAGGATTCAAGCACTAATAGAGAGTGGACCCGAGATAATG GGTGGAAAGAAGAAAAATGTGTGGACTTTCATTCTCGTTTCTGCTCAAATTAA
AA sequence Show only first row Show all	>Potri.001G426200.1 pacid=42787617 polypeptide=Potri.001G426200.1.p locus=Potri.001G426200 ID=Potri.001G426200.1.v4.1 annot-version=v4.1 MAIESVGGSIISKIAELMVEPVGRQFRYMFCFNNFVEEFKERKENLYSAKERLQNIVEDAKTNAEEIEKVVKKWLEDANNEIEGVKPLENEIGKNGKCFT WCPNCMRQFKLSKALANKSETLRKLEEISEKFKTVSHKAHLQPIEFLPSKEFTPSESSKEALEQIMKALKDDSVNMIGLYGMGGVGKTTLVKEVGRRAKE LQLFPEVLMATVSQNPNVTDIQDRMADKLRLDIKEKSREGRADRLRHRLKEVEKMLIILDDVWEDIDLKEIGIPFGDDHRGCKILLTTRFEHICSSMECQ QKVFLRVLSEDEALALFRINAGLRDGDSTLNTVAREVARECHGLPIALVTVGRALRDKSLVQWEVASKQLKDSQFPRMEQIDKQKNAYTCLKLSYDYLKF EETKSCFVLCCLFPEDYDIPIEDLTRYAVGYGLHQDAEPIEDARKRVFVAIENLKDCCMLLGTETGEHVKMHDLVRDFAIQIASSEEYGFMVKAGIGLQK WPMSNTSFEGCTTISLMGNKLAELPEGLVCPKLKVLLLEVDYGLNVPQRCFEGMREIEVLSLNGGRLSLQSLELSTKLQSLVLIMCGCKDLIWLRKLQRL KILGLMWCLSIEELPDEIGELKELRLLDVTGCERLSRIPVNLIGRLKKLEELLIGDGSFEEWDVVGCDSTGGMNASLKELNSLSQLAVLSLRIPKVECIP RDFVFPSLHKYDIVLGNRFDAGGYPTSTRLNLAGTSATSLNVMTFELLFPTVSQIVFTSLEGLKNIELHSDHMTNHGHEPQKGLLQRLEFVQVQRCGDIC TLFPAKLRQALKHLKKVIIDSCKSLEEVFELGEVDEESNEEKEMPLLSSLTMLELQGLPELKCIWKGATRHVSLQSLAHLKVWSLDKLTFIFTPSLAQSL PQLETLEIEKCGELKHIIREQDGEREIIPESPGFPKLKTLLVSGCGKLEYVFSVSMSPSLPNLEQMTIYYADNLKQIFYGGEGDALTRDDIIKFPQLKEL SLRLGSNYSFLGPQNFAVQLPSLQKLTIHGREELGNWLAQLQQKGFLQRLRFVEVNDCGDVRTPFPAKLLQALKNLSSVDIESCKSLEEVFELGEVDEES NEEKELSLLSSLTTLLLIDLPELRCIWKGPTRHVSLQNLVHLNLNSLDKLTFIFTPSLAQSLPKLATLDIRYCSELKHIIREKDDEREIISESLRFPRLK TIFIEECGKLEYVFPVSVSPSLLNLEEMGIFYAHNLKQIFYSGEGDALTTDGIIKFPRLRKLSLSSRSNFSFFGPKNFAAQLPSLQCLIIDGHEELGNLL AKLQELTSLKTLRLGSLLVPDMRCLWKGLVLSNLTTLVVYECKRLTHVFSDSMIASLVQLNFLNIESCEELEQIIARDNDDGKDQIVPGDHLQSLCFPNL CEIDVRKCNKLKCLFPVGMASGLPNLQILKVREASQLLGVFGQEENALPVNVEKVMELPNLQVLLLEQLSSIVCFSLGCYDFLFPHLEKLKVFECPKLIT KFATTPNGSIRAQSEVSEVAEDSSTNREWTRDNGWKEEKCVDFHSRFCSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	0	1
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	2.23	0.8874
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	4.00	0.8787
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	4.00	0.8882
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	4.24	0.8862
AT2G45040			Matrixin family protein (.1)		Potri.003G077400 [exp]	6.32	0.8348
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	7.00	0.7977
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	7.48	0.8852
AT5G61820			unknown protein		Potri.012G110300 [exp]	8.00	0.8485
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	8.12	0.8668
AT2G36430			Plant protein of unknown funct...		Potri.004G185501 [exp]	8.36	0.8495

Compare expression of checked genes

Potri.001G426200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.