Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 194 / 2e-55 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 191 / 2e-54 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 172 / 1e-47 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G63020 169 / 9e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61180 164 / 5e-45 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12220 162 / 2e-44 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61300 161 / 3e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 157 / 2e-42 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 152 / 4e-41 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 152 / 7e-41 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G425500 [exp] 604 / 0 AT4G27220 251 / 7e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426660 [exp] 602 / 0 AT4G27220 238 / 3e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 591 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 589 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 562 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 559 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 541 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 545 / 2e-180 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G432366 [exp] 504 / 9e-178 AT4G27190 231 / 1e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020016 [exp] 92 / 5e-20 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022464 [exp] 89 / 4e-19 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10002945 [exp] 88 / 7e-19 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 86 / 4e-18 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 86 / 4e-18 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 85 / 6e-18 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 84 / 2e-17 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 82 / 6e-17 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 81 / 2e-16 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 81 / 3e-16 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G427440.1 pacid=42791713 polypeptide=Potri.001G427440.1.p locus=Potri.001G427440 ID=Potri.001G427440.1.v4.1 annot-version=v4.1 ATGCTTATAATCCTGGATGATGTTTGGAAACATATTGACTTGGAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAA CACGTGTTCAAGGCATATGTTTTTCTATGGAGTGCCAGCAAAAAGTGCTTTTAAGAGTCTTACCTGAAGATGAAGCATGGGATTTATTCAGAATCAATGC AGGTTTACGTGATGGGGACTCTACCTTGAACACAGTGGCAAGGGAGGTTGCGAGAGAATGCCAAGGCTTGCCTATAGCACTTGTGACAGTGGGAAGGGCT CTAAGAGGTAAATCACGAGTTCAGTGGGAAGTAGCGTCTAAACAGCTCAAAGAATCTCACTTTGTGCGCATGGAACAAATTGATGAACAAAATAATGCTT ACACATGTCTTAAGTTGAGCTATGATTATTTGAAGTACGAGGAAACCAAGTCATGTTTCGTGCTATGCTGTTTATTTCCAGAAGATTATGACATTCCAAT CGAGGACTTGACGAGATATGCAGTTGGCTATGGGTTACATCAAGATGCGGAGCCCATTGAAGATGCAAGGAAAGGAGTTTCTGTGGCCATCGAAAACCTC AAAGATTGTTGCATGCTGTTGGGCACTGAAACTGAAGAACATGTGAGAATGCATGACTTGGTTCGTGACTTTGCTATTCAGATAGCATCATCAGAAGAAT ATGGATTCATGGTAAAGGCTGGCATTGGGTTGGAGAAGTGGGCAATGAGAAACAAAAGCTTTGAAGGTTGTACAACAATTTCGTTAATGGGCAATAAACT AGCAGAACTTCCTGAAGGATTGGTATGTCCACAGCTCAAAGTTCTATTATTAGAACTGGAAGATGGTATGAATGTTCCAGAGAGGTTTTTTGAAGGGATG AAAGAAATTGAAGTTTTGTCTCTGGAGGAGGGCGTTTGTCGCTGCAATCACTTGAACTCTCAACGAAACTTCAATCGTTGGTGTTGA
AA sequence Show only first row Show all	>Potri.001G427440.1 pacid=42791713 polypeptide=Potri.001G427440.1.p locus=Potri.001G427440 ID=Potri.001G427440.1.v4.1 annot-version=v4.1 MLIILDDVWKHIDLEEIGIPFGDDHRGCKILLTTRVQGICFSMECQQKVLLRVLPEDEAWDLFRINAGLRDGDSTLNTVAREVARECQGLPIALVTVGRA LRGKSRVQWEVASKQLKESHFVRMEQIDEQNNAYTCLKLSYDYLKYEETKSCFVLCCLFPEDYDIPIEDLTRYAVGYGLHQDAEPIEDARKGVSVAIENL KDCCMLLGTETEEHVRMHDLVRDFAIQIASSEEYGFMVKAGIGLEKWAMRNKSFEGCTTISLMGNKLAELPEGLVCPQLKVLLLELEDGMNVPERFFEGM KEIEVLSLEEGVCRCNHLNSQRNFNRWC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G427440 [exp]	0	1
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	3.31	0.8946
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	4.69	0.8827
AT4G27190			NB-ARC domain-containing disea...		Potri.001G435100 [exp]	10.19	0.8216
					Potri.001G427210 [exp]	21.16	0.8221
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	23.55	0.7720
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	34.00	0.7694
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	35.21	0.7479
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	37.97	0.7863
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	40.47	0.7915
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	74.03	0.7656

Compare expression of checked genes

Potri.001G427440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.