Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 179 / 5e-49 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 160 / 1e-42 NB-ARC domain-containing disease resistance protein (.1) AT5G43730 158 / 5e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G63020 158 / 7e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61190 156 / 3e-41 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G51480 153 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 153 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 153 / 3e-40 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61310 152 / 6e-40 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 150 / 4e-39 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G429430 [exp] 721 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G434000 [exp] 700 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 677 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 675 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 672 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G435100 [exp] 653 / 0 AT4G27190 223 / 2e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 652 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426660 [exp] 646 / 0 AT4G27220 238 / 3e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 645 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 107 / 1e-24 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10021769 [exp] 106 / 2e-24 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10005218 [exp] 104 / 1e-23 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 100 / 1e-22 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 100 / 4e-22 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 100 / 5e-22 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 99 / 8e-22 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 98 / 2e-21 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 96 / 2e-21 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 97 / 4e-21 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G432680.1 pacid=42789531 polypeptide=Potri.001G432680.1.p locus=Potri.001G432680 ID=Potri.001G432680.1.v4.1 annot-version=v4.1 ATGGTGGAACCAGTGGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACAATTTTGTTGAAGAATTCAAAGAACAAAAGGAGAACCTTGCTTTAGCACTAG ATGGTCTGCAAAAAGAAGTCGAAGCTGCTGAAAGGAATGCTGAAGAAATTAAGAAAGTTGTCAAAAAGTGGATGGAAGATGCAAACAGCAAAATTGAAGG TGCGAAGCCCTTGGAAAATGAAATAGGAAGAAATGGCAAATGCTTTACTTGGTGCCCAAACTGCATGCGACAATTCAAGTTAAGCAAGGCACTGGCCAAG AAGTCGGAGACTTTCAGAAAACTTCTAGAAAATAGCACAAAGTTTACAAAAGTGTCCGACATAGCTCATCCTCAGCCCAGAGAATTTCTCCCATCAAAGG AATTCACGTCCTCAAAATCGTCAGAAGAAGCTTTCGAACAGATTATGGATGCTCTCAAAGATGACAAAGTCAATATGATCGGACTGTGCGGCATGGGAGG GGTGGGTAAAACCACCCTGGTGAAAGAAGTAGGCACGATAGCCGTAGAGTTGCAGCTTTTTCCTGTAGTTTTGATGGCTACGGTGTCGCAGAATCCAAAT GTCACAGACATTCAGCACCTAATGGCAGATAAGTTAGGTCTGAATATTAAAAAAAAGAATACTAATCCAGGGAGAGCAGATCTATTACGGCAGAGACTGA AGCAAGTGGAGAAGATGCTTATTATCCTAGATGATGTTTGGAAATATATTGACTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAA AATTCTTCTAACAACACGTCTTCAAGCCATATGTTCTTCTATGGAGTGCCAGCAAACAGTGCTTTTAAGAATCTTAAGTGAAGATGAAGCAATGGTTTTA TTCAGAATCAATGCAGGTTTACGTGATGGGGACTCTACCTTGAACAGAGTGGCAAGGGAGGTTGCGAGAGAATGCCAAGGCTTGCCTATAGCACTTGTGA CAGTGGGAAAGGCTCTAAGAGATAAATCTGAAGTTGAGTGGGAAGAAGCATTTAGACGGCTAAAAAACTCTCAATTTCTGGACATGGAACACATTGAGGA ACAAAAAACTGCATATGCATGTCTTAAGTTGAGCTATGATTATTTGATGAGCAAGGAAACCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGAT TATAACATTCCAATCGATGACTTGACGAGATACACAGTTGGGTATGAGTTACATCAAGATGTGGAGTCCATTGGAGATGCAAGGAAATGA
AA sequence Show only first row Show all	>Potri.001G432680.1 pacid=42789531 polypeptide=Potri.001G432680.1.p locus=Potri.001G432680 ID=Potri.001G432680.1.v4.1 annot-version=v4.1 MVEPVGRQFRYMFCFNNFVEEFKEQKENLALALDGLQKEVEAAERNAEEIKKVVKKWMEDANSKIEGAKPLENEIGRNGKCFTWCPNCMRQFKLSKALAK KSETFRKLLENSTKFTKVSDIAHPQPREFLPSKEFTSSKSSEEAFEQIMDALKDDKVNMIGLCGMGGVGKTTLVKEVGTIAVELQLFPVVLMATVSQNPN VTDIQHLMADKLGLNIKKKNTNPGRADLLRQRLKQVEKMLIILDDVWKYIDLKEIGIPFGDDHRGCKILLTTRLQAICSSMECQQTVLLRILSEDEAMVL FRINAGLRDGDSTLNRVAREVARECQGLPIALVTVGKALRDKSEVEWEEAFRRLKNSQFLDMEHIEEQKTAYACLKLSYDYLMSKETKLCFLLCCLFPED YNIPIDDLTRYTVGYELHQDVESIGDARK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432680 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	1.41	0.9361
AT4G27220			NB-ARC domain-containing disea...		Potri.001G429660 [exp]	2.00	0.8820
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	4.89	0.8355	Pt-RGA-II24.59
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	5.09	0.7497
AT4G27250			NAD(P)-binding Rossmann-fold s...		Potri.001G415500 [exp]	7.28	0.7082
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	8.06	0.8355
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	9.16	0.7433
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	14.42	0.8184
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	16.00	0.7020
AT5G41620			unknown protein		Potri.003G135000 [exp]	16.79	0.7139

Compare expression of checked genes

Potri.001G432680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.