Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 262 / 6e-72 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 257 / 6e-71 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 224 / 4e-60 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61180 207 / 2e-54 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G63020 206 / 2e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61300 204 / 4e-54 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 203 / 3e-53 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 203 / 4e-53 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G05400 198 / 8e-52 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 195 / 6e-51 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G434000 [exp] 2075 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 1971 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 1843 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 1683 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G425500 [exp] 1588 / 0 AT4G27220 251 / 7e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 1531 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1412 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 1380 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 1348 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 114 / 4e-25 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 112 / 2e-24 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 112 / 2e-24 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 110 / 7e-24 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 110 / 8e-24 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 109 / 1e-23 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022464 [exp] 107 / 3e-23 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10024173 [exp] 107 / 5e-23 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 107 / 6e-23 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022792 [exp] 107 / 7e-23 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G433466.2 pacid=42792999 polypeptide=Potri.001G433466.2.p locus=Potri.001G433466 ID=Potri.001G433466.2.v4.1 annot-version=v4.1 ATGGCTCTCGAAAGTGCTGGTGTATCCATTATATCTAAGATAGCGGGAGTCTTGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTAGAAA GTTTTGCTCAAGAATTCAATGAACGAAAACAGAACCTGGTTTCGGCAAAAGAACGTCTGCAAAAAGGTGTCGAAGCTGCTGAAAGGAATGCTGAAGAAAT TTACAAAGATGTCAAAAAGTGGCTGGAAGATGCAACCAAAGCAATTGATCATGAAGATGTGAAGCATTTGGAAAATGAAATACGAAAAAATGACAACCGC TTTACTTGCTGTCCAAACTGCATCCGGCAATTCAAGTTAAGCAAGGCACTGGCCAAGAAGTCGGAGACTTTCAGAAAACTTGGAGAAAGTAGCGAAAAGT TGAAAACAGTGGCCCAAAAAGCTCCTCCTCAGCCCATAGAATTTCTAACATCAAAGGAATTCACGACCTCAGAATCGTCAAAAGAAGCTTTGGAACAGAT CATGAAAGCTCTCAAAGATGACAACGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACAACCCTGGTGAAAGAAGTAGGCAGGAGAGCC ATAGAGTCGCAGCTTTTTCCTGAAGTTTTGATGGCTACGGTGTCCCAGAATCCAAATTTCATAGGCATCCAGGATCGAATGGCAGATAGTTTACATCTGA AATTTGAAAAAACGAGTAAAGAAGGTAGAGCAAGTGAATTATGGCAGAGACTGCTGGGAAAGAAGATGCTTATAATCCTAGATGATGTTTGGAAACATAT TGACTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTCAAGGCATATGTTTTTCTATGGAGTGC CAGCAAAAAGTGCTTTTAAGAGTCTTACCTGACGATGAAGCATGGGATTTATTCAGAATCAATGCAGGTTTACGTGATGGGGACTCTACCTTGAACACAG TGACAAGGGAGGTTGCGAGAGAATGCCAAGGCTTGCCTATAGCACTTGTGACAGTGGGAAGGGCTCTAAGAGGTAAATCACGAGTTCAGTGGGAAGTAGC GTCTAAACAGCTCAAAGAATCTCAATTTGTGCGCATGGAACAAATTGACGAACAAAATAATGCTTACACATGTCTTAAGTTGAGCTATGATTATTTGAAG TACGAGGAAACCAAGTCATGTTTCGTGCTATGCTGTTTATTTCCAGAAGATTATGACATTCCAATCGAGGACTTGACGAGATATGCAGTTGGCTATGGGT TACATCAAGATGCGGAGCCTATTGAAGATGCAAGGAAACGAGTTTCCGTGGCAATCGAAAACCTCAAAGATTGCTGCATGCTGTTGGGCACTGAAACTGA AGAACATGTGAGAATGCATGACTTGGTTCGTGACTTTGCTATTCAGATAGCATCATCAAAAGAATATGGATTCATGGTATTGGAGAAGTGGCCAACGAGT ATTGAAAGCTTTGAAGGTTGCACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCACGGCTCAAAGTTCTATTAT TAGAAGTGGATTATGGTATGAATGTTCCTCAGAGGTTTTTTGAAGGGATGAAAGAAATTGAAGTTTTGTCTCTGAAGGGAGGGCGTTTGTCATTGCAATC ACTTGAACTCTCAACGAAACTTCAATCGTTGGTGTTGATCAGTTGTGGATGCAAGGACCTCATTTGGTTGAAAAAGATGCAGAGACTTAAGATACTTGTT TTTCAGTGGTGCTCATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGAAGTGACAGGTTGTGAAAGGCTAAGAAGGA TTCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAGCTGTTGATCGGGCATCGCAGCTTTGATGGATGGGATGTTGATGGATGTGACAGCACAGG AGGAATGAATGCAAGCCTGACAGAACTAAATTCGTTGTCTCAGTTAGCCGTATTATCATTGAGGATACCGAAGGTTGAATGCATTCCCAGAGATTTTGTT TTTCCCAGCTTGCTCAAATATGATTTAATGTTAGGGAATACTACTAAATATTATTCTAATGGATACCCAACCTCCACAAGATTAATTTTGGGTGGTACAT CCTTAAATGCGAAGACATTTGAGCAATTGTTTTTACATAAATTAGAATTTGTAGAAGTGAGGGATTGTGGGGATGTTTTCACTCTGTTTCCAGCAAGATT GCAGCAAGGTTTAAAAAATCTAAGGAGGGTGGAAATTGAGGACTGCAAATCAGTGGAAGAGGTATTTGAATTGGGTGAGGAGAAGGAGCTGCCGTTGCTG TCATCTTTAACAGAGTTAAAGCTGTACCGGTTACCTGAGCTCAAATGCATATGGAAGGGGCCCACCAGACATGTCAGCCTCCACAGTCTTGCTCATCTGC ATTTGGATTCTCTCGACAAAATGACATTTATCTCCACACCGTCCCTTGCTCAAAGTCTGTCAAAGCTAGAAACCCTTTGCATAAGTAAATCCGGTGAATT GAAGCATATTATCAGAGAAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCCTTGCTTCCCAAAATTAAAAACTATCATCATAGAAGGCTGTGGTAAA CTGGAATATGTCTTCCGTGTCTCCGTGTCTCTAACTCTTCAAAGTCTACCACAGCTAAAAAGACTTCAGGTAAGTGATTGTGGTGAATTGAAGCATATTA TCAGAGAAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCCTCGCTTCCCAAAATTAAAAACTCTCCGCATATCTCACTGTGGTAAACTGGAATATGT CTTCCCAGTCTCTTTGTCTCATAACAGAGATGGCATCATAGACTTAACCATTGAAGGCCACGAAGAAGTGGGTAATTGGTTGGCACAGCTACAACAAAAC GGCTTCGTACAAAGATTAGAATTTGTACATGTGGACAAATGTGGGGATGTTCGCGCTCCGTTTCCAGCAAAATTGCTGCGAGCTCTGAAAAATCTAAAGG AGTTGACTGTTCGCCGCTGTAAATCATTGGAAGAGGTATTTGAATTGGGTGAGCCTTATGAAGGAAGCACTGAGGAGAAGGAGATGCCGCTGCTGTCATC TTTAATACTGTCAGAGTTACCTGAGCTCAAATGTATATGGAAGGGGCCCACCAGACATGTCAGCCTCCAAAGTCTTGCTCGTCTGTTTTTGACTTCTCTC GACAAACTGATATTTATCTTCACACCGTCTCTCGCTCAAAGTCTGCCAAAGCTACAAGACCTTCACATAAGTAAATGCAGTGAATTGAAGCATATTATCA GAAAAGAGGATGGTGAAAGGGAGATAATTCCAGAGTCTCCTTGCTTTCCAAAATTAGAAGCTCTCTTCATACAAGACTGTGGTAAACTGGAATATGTCCT CCCTGTCTCTGTGTCTCCAAGCCTTCTGAACCTGGAAGAGATGGGGATTTTTAATGCTCATAATTTAAAGCAAATATTTTACAGTGGAGAAGGAGATGCA CTCACCAGAGATGCCATCATCAAGTTCCCTCAACTAAGAGAATTGTCTCTTTCAAATTGCAGCTTCTTTGGTCCAAAGAATTTTGCTGCCCAATTGCCTT CCTTGCAAATTCTAGAAATTGATGGCCACAAAGAATTGGGAAATTTGTTTGCACAGCTCCAAGGGTTGACAAATTTTAAGAAATTACACTTGCGCTTCCT GCTGGTGCCTGACATTAGGTGTATATGGAAGGGTCTCGAGTTGAGCAAATTGACTACTTTGGAGGTGGTTGAGTGTAAGAGACTGACACATGTATTCACA TGCAGTATGATTGTCAGTCTAGTTCAACTAAAAGTCCTAAAGATATTGTCCTGTGAGGAATTGGAACAAATCATTGCTAAGGATGATGATGAAAACGACC AGATATTGTTAGGTGATCATCTCCGATCTTTATGCTTTCCCAAATTACGTCAAATTGAGATTAGAGAATGCAACAAGTTGAAGAGCCTCTTCCCAGTAGC CATGGCTTCAGGTCTCCCAAATCTCCGAATACTTAGAGTAACAAAATCCTCTCATTTATTGGGAGTATTTGGGCAGGAAGATCATGTTTCACTTGTCAAC GTTGAGAAGGAGATGGTGCTCCCTAATCTAAAGAAGCTGTCGCTAAAACAATTACCAAGTATTGTCTGCTTCAGTTTCGGATGCTGTGATTTCTTATTCC CTCGTTTGAAGAAGTTGAAGGTGTATGAATGCTCAAAGTTGACCACAAAATTTGCTATTACACCAGATGGTTCAATGAGTGCTCAATCAGAGGTATCTGA AGTAGCTGAAGATTCAAGCATTAATAGAGAGTGGACCAGAAATAATGGGTGGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGAT GATGATGGGTCAGAATAG
AA sequence Show only first row Show all	>Potri.001G433466.2 pacid=42792999 polypeptide=Potri.001G433466.2.p locus=Potri.001G433466 ID=Potri.001G433466.2.v4.1 annot-version=v4.1 MALESAGVSIISKIAGVLVEPVGRQFRYMFCLESFAQEFNERKQNLVSAKERLQKGVEAAERNAEEIYKDVKKWLEDATKAIDHEDVKHLENEIRKNDNR FTCCPNCIRQFKLSKALAKKSETFRKLGESSEKLKTVAQKAPPQPIEFLTSKEFTTSESSKEALEQIMKALKDDNVNMIGLYGMGGVGKTTLVKEVGRRA IESQLFPEVLMATVSQNPNFIGIQDRMADSLHLKFEKTSKEGRASELWQRLLGKKMLIILDDVWKHIDLKEIGIPFGDDHRGCKILLTTRLQGICFSMEC QQKVLLRVLPDDEAWDLFRINAGLRDGDSTLNTVTREVARECQGLPIALVTVGRALRGKSRVQWEVASKQLKESQFVRMEQIDEQNNAYTCLKLSYDYLK YEETKSCFVLCCLFPEDYDIPIEDLTRYAVGYGLHQDAEPIEDARKRVSVAIENLKDCCMLLGTETEEHVRMHDLVRDFAIQIASSKEYGFMVLEKWPTS IESFEGCTTISLMGNKLAELPEGLVCPRLKVLLLEVDYGMNVPQRFFEGMKEIEVLSLKGGRLSLQSLELSTKLQSLVLISCGCKDLIWLKKMQRLKILV FQWCSSIEELPDEIGELKELRLLEVTGCERLRRIPVNLIGRLKKLEELLIGHRSFDGWDVDGCDSTGGMNASLTELNSLSQLAVLSLRIPKVECIPRDFV FPSLLKYDLMLGNTTKYYSNGYPTSTRLILGGTSLNAKTFEQLFLHKLEFVEVRDCGDVFTLFPARLQQGLKNLRRVEIEDCKSVEEVFELGEEKELPLL SSLTELKLYRLPELKCIWKGPTRHVSLHSLAHLHLDSLDKMTFISTPSLAQSLSKLETLCISKSGELKHIIREEDGEREIIPESPCFPKLKTIIIEGCGK LEYVFRVSVSLTLQSLPQLKRLQVSDCGELKHIIREEDGEREIIPESPRFPKLKTLRISHCGKLEYVFPVSLSHNRDGIIDLTIEGHEEVGNWLAQLQQN GFVQRLEFVHVDKCGDVRAPFPAKLLRALKNLKELTVRRCKSLEEVFELGEPYEGSTEEKEMPLLSSLILSELPELKCIWKGPTRHVSLQSLARLFLTSL DKLIFIFTPSLAQSLPKLQDLHISKCSELKHIIRKEDGEREIIPESPCFPKLEALFIQDCGKLEYVLPVSVSPSLLNLEEMGIFNAHNLKQIFYSGEGDA LTRDAIIKFPQLRELSLSNCSFFGPKNFAAQLPSLQILEIDGHKELGNLFAQLQGLTNFKKLHLRFLLVPDIRCIWKGLELSKLTTLEVVECKRLTHVFT CSMIVSLVQLKVLKILSCEELEQIIAKDDDENDQILLGDHLRSLCFPKLRQIEIRECNKLKSLFPVAMASGLPNLRILRVTKSSHLLGVFGQEDHVSLVN VEKEMVLPNLKKLSLKQLPSIVCFSFGCCDFLFPRLKKLKVYECSKLTTKFAITPDGSMSAQSEVSEVAEDSSINREWTRNNGWKEEEEEEEEEEEDDDD DDGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	2.44	0.8430	Pt-RGA-II24.59
AT2G24960			unknown protein		Potri.013G025200 [exp]	5.47	0.7905
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	5.47	0.8048
AT4G27190			NB-ARC domain-containing disea...		Potri.001G435100 [exp]	5.47	0.8304
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	8.48	0.7928
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	9.16	0.7536
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	11.66	0.7966
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	13.22	0.8124
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	15.71	0.7698
AT3G14470			NB-ARC domain-containing disea...		Potri.004G169800 [exp]	16.97	0.7733

Compare expression of checked genes

Potri.001G433466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.