Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 243 / 9e-69 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 236 / 1e-66 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 216 / 1e-59 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G05400 197 / 4e-53 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 197 / 5e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47250 194 / 2e-52 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 194 / 5e-52 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 193 / 6e-52 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12220 189 / 2e-50 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 186 / 3e-49 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G432366 [exp] 1092 / 0 AT4G27190 231 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 1044 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 1033 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 1023 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 1023 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G434000 [exp] 1019 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 1007 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 1004 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 994 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026132 [exp] 108 / 5e-24 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 107 / 9e-24 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 104 / 1e-22 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 103 / 1e-22 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 102 / 5e-22 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 102 / 6e-22 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 100 / 2e-21 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 100 / 2e-21 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 99 / 3e-21 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 99 / 5e-21 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G433700.1 pacid=42788081 polypeptide=Potri.001G433700.1.p locus=Potri.001G433700 ID=Potri.001G433700.1.v4.1 annot-version=v4.1 ATGGCTCTCGAAAGTGCTGGTGGATCCATTATAGCTATGCTAGCAGAACTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGCTCAAGAATTCAAAGAAAGAGAGGAGAACCTGGTTTCGGAAAAAGATCGTCTGCAAGATGTTGTCAGAGCTCCTGAAAGGAATGCTGAAGAAAT TTACAAAGATGTCAAAAAGTGGCTGGAAGATGCAAACAACGAAATTGAAGGTGCGAAGCCGTTGGAAAATGAAATAGGAAAAAATGGCAAATGCTTTACT TGGTGCCCAAACTGCATGCGACAATTCAAGTTAAGCAAGGCACTGGCCAAGAAGTCGGAGACTTTCAGAAAACTTGGAGAAAGTAGCGAAAAGTTTACAA AAGTGGCCGACAAACGTCCTCCTCAGCGCATAGAATTTCTAACATCAAAGGAATTCACGCCCTCAAAATCGTCAGAAGAAGCTTTGGAACAGATTATGGA AGCTCTCAAAGATGACAACGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCTTGGTGAAAGAAGTAGGCAGGATAGCCACAGAG TCGCAGCTTTTTGATGAAGTTTTGATGGCTACGGTGTCGCAGAATCCAAATGTCATAGACATTCAGAACCGAATGGCAGATATGTTAGGTTTGAAAATTG AAGAAAACAGTAAAGAAGGGAGAGCAGATCGATTACGGCAGAGACTGAAGAAAGTGGAGAAGATGCTTATAACCCTGGATGATGTTTGGAAACATATTGA CTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACTCGTCGTAAAAATATATGTTCTTCTATGAAGTGCCAG CAAAAAGTGTTCTTAAGAGTATTACCTGAAAAAGAAGCATGCGATTTATTCAGAATCAATGCAGGTTTAGATGATGGGGACTCTACCTTGAACGAAGTGG CAAGGGATGTTGCGAGAGAATGCCACGGCTTGCCTATAGCACTCGTGACAATGGGAAGGGCTCTAAGAGATGAATCTGCAGTTAAGTGGAAAAGAGTGTC TAAACAGCTCAAAAACTCTCAATTTCCGGACATGGAACAAATTGAAGAAAAAAATGCATATGCATGTCTTAAGTTGAGCTACGATTATTTGAAGTCCAAG GAAACCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACAACATTCCAGTCGAGGACTTGACGAGATATGCAGTTGGCTATGGGTTACATC AAGATGGGGAGCCCATTGAAGATGCAAGGGAACAAGTTCATGTGGCAATCAAAGACCTCAAAGCTTGTTGTTTGTTGTTGGGCACTGAAACTGAAGAACA TGTGAGAATGCATGACTTGGTTCGTGATGTTGCTATTCAGATAGCATCATCAAAAGAATATGGATTCATGGTATTGGAGAAGTGGCCAACGAGTATTGAA AGCTTTGAAGGTTGCACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCACAGCTCAAAGTTCTATTATTAGAAC TGGATGATGGTTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGAAATTGAAGTTTTGTCTCTGAAGGGAGGGTGTTTGTCATTGCAATCACTCGA ACTCTCAACGAAACTTCAATTGTCGCTGTTGACGGAGTGCGAATGCAAGGACCTCATTTCGTTGAGAAAGCTGCAGGGACTTAAGATTCTTGGTCTTATG TCGTGCTTATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGATGTGACAGGTTGTCAAAGGCTAAGAAGGATCCCTG TGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAGCTGTTGATCGGGGATGGCAGCTTTGATGGATGGGATGTTGTTGGATGTCACAGGAGGAATGAATG CAAGCCTAACAGAACTAAATTCGTTGTCTCAGTTAGCCGTATTATCATTGAGGATACCGAAGGTTGA
AA sequence Show only first row Show all	>Potri.001G433700.1 pacid=42788081 polypeptide=Potri.001G433700.1.p locus=Potri.001G433700 ID=Potri.001G433700.1.v4.1 annot-version=v4.1 MALESAGGSIIAMLAELMVEPVGRQFRYMFCFNNFAQEFKEREENLVSEKDRLQDVVRAPERNAEEIYKDVKKWLEDANNEIEGAKPLENEIGKNGKCFT WCPNCMRQFKLSKALAKKSETFRKLGESSEKFTKVADKRPPQRIEFLTSKEFTPSKSSEEALEQIMEALKDDNVNMIGLYGMGGVGKTTLVKEVGRIATE SQLFDEVLMATVSQNPNVIDIQNRMADMLGLKIEENSKEGRADRLRQRLKKVEKMLITLDDVWKHIDLKEIGIPFGDDHRGCKILLTTRRKNICSSMKCQ QKVFLRVLPEKEACDLFRINAGLDDGDSTLNEVARDVARECHGLPIALVTMGRALRDESAVKWKRVSKQLKNSQFPDMEQIEEKNAYACLKLSYDYLKSK ETKLCFLLCCLFPEDYNIPVEDLTRYAVGYGLHQDGEPIEDAREQVHVAIKDLKACCLLLGTETEEHVRMHDLVRDVAIQIASSKEYGFMVLEKWPTSIE SFEGCTTISLMGNKLAELPEGLVCPQLKVLLLELDDGLNVPERFFEGMKEIEVLSLKGGCLSLQSLELSTKLQLSLLTECECKDLISLRKLQGLKILGLM SCLSIEELPDEIGELKELRLLDVTGCQRLRRIPVNLIGRLKKLEELLIGDGSFDGWDVVGCHRRNECKPNRTKFVVSVSRIIIEDTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426430 [exp]	1.00	0.9096
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	1.73	0.8966
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	4.00	0.8741
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	4.69	0.9004
AT2G39580			unknown protein		Potri.010G208200 [exp]	6.48	0.8380
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	11.66	0.8324
AT5G36930			Disease resistance protein (TI...		Potri.011G013700 [exp]	16.70	0.7906
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	17.88	0.7556
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	18.76	0.8008
AT4G26350			F-box/RNI-like/FBD-like domain...		Potri.011G024600 [exp]	18.97	0.7958

Compare expression of checked genes

Potri.001G433700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.