Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGA-II24.63
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 271 / 5e-75 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 251 / 8e-69 NB-ARC domain-containing disease resistance protein (.1) AT5G63020 210 / 1e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G26090 205 / 5e-54 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61180 203 / 3e-53 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61300 198 / 2e-52 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 195 / 1e-50 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61190 195 / 2e-50 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 192 / 1e-49 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47250 190 / 3e-49 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G426200 [exp] 2141 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 2030 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 2023 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 1632 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 1453 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 1414 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 1355 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G425500 [exp] 1333 / 0 AT4G27220 251 / 7e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 1309 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 114 / 2e-25 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007261 [exp] 111 / 3e-24 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 110 / 6e-24 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 110 / 6e-24 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 110 / 8e-24 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 109 / 2e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 107 / 4e-23 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10021769 [exp] 107 / 7e-23 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 104 / 2e-22 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10005321 [exp] 103 / 1e-21 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G434000.11 pacid=42790003 polypeptide=Potri.001G434000.11.p locus=Potri.001G434000 ID=Potri.001G434000.11.v4.1 annot-version=v4.1 ATGGCTCTCGAAAGTGCTGGTGGATCCATTATATCTAAGATAGCAGAACTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA CTTTTGTTGAAGAATTCAAAGAACGAAAGGAGAACCTTGCTTTAGCACTAGATGGTCTGCAAGACGATGTTGAAGCTGCTGAAAGGAATGCTAAAGAAAT TTACGAAGATGTCAAACAGTGGCTGGAAGATGCAAACAACGAGATTGAAGGTGCGAAGCCCTTGGAAAATGAAATAGGAAAAAATGGCAAATGCTTCACT TGGTGTCCAAACTGCATGCGACAATTCAAGTTAAGCAAGGCACTGGCCAAGAAGTCGGAGACTTTCAGAGAACTTGGAGAAAGTAGCGAAAAGTTTAAAA CAGTGGCCCACAAAGCTCATCCTCAGCCCATAGAATTTCTTCCATCAAAGGAATTCACGCCCTTAAAATCGTCAGAAGAAGCTTTCGAACAGATTATGGA AGCTCTCAAAGATGACAAAGTCAATATGATCGGACTGTGCGGCATGGGAGGGGTGGGTAAAACCACCCTGGCGAAAGAAGTAGGCAGGAGAGCCAAAGAG TTGCAGCTTTTTCCTGAAGTTTTGATGGCTACGGTGTCCCAGAATCCAAATGTCACAGACATCCAGGATCGAATGGCAGATAAGTTAGGTCTGGATATTA AAGAAAAGAGTAGAGAAGGGAGAGCAGATCGATTAAGGCATATACTGAAGGAAGTGGAGAAGATGCTTATAATCCTAGATGATGTTTGGAAATATATTGA CTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTCAAGCCATATGTTCTTCTATGGAGTGCCAG CAAAAAGTGCTTTTAAGAGTCTTAACTGAAGATGAAGCATTGGTTTTATTCAGAATCAAAGCAGGTTTACGTGATGGGGACTCTACCTTGAACACAGTGG CAAGGGAGGTTGCGAGAGAATGCCAAGGCTTGCCTATAGCACTTGTGACGGTGGGAAGGGCTCTAAGAGGTAAATCTGAAGTTGAGTGGGAAGTAGCATT TAGACAGCTAAAAAACTCTCAATTTCTGGACATGGAACACATTGATGAACAAAGAACTGCATATGCATGTCTTAAGTTGAGCTATGATTATTTGAAGAGC AAGGAAACCAAGTTATGTTTCTTGATATGTTGTTTATTTCCAGAAGATTACAACATTCCAATCGAGGACTTGACGAGATATGCAGTTGGGTATCTCATTG AAGATGCAAGGAAACGAGTTTCTGTGGCCATCGAAAACCTCAAAGATTGTTGCATGCTGTTGGGCACTGAAACTGAAGAACATGTGAGAATGCATGACTT GGTTCGTGATGTTGCTATTCGGATAGCATCATCTAAAGAATATGGATTCATGGTAAAGGCAGGCATTGGGTTGAAGGAGTGGCCAATGAGCAATAAAAGC TTCGAAGGTTGTACAACTATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCAAAGCTCGAAGTTCTATTATTAGAACTGG ATGATGGTTTGAATGTTCCTCAGAGGTTTTTTGAAGGGATGAAAGAAATTGAGGTTTTGTCTCTGAAGGGAGGGTGTTTGTCATTGCAATCACTTGAACT CTCAACGAAACTTCAATCGTTGATGTTGATCACGTGTGGATGCAAGGACCTCATTTGGTTGAGAAAGCTGCAGAGACTTAAGATTCTTGGTCTTATGTGG TGCTTATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGCTAAGGTTGTTGGATGTGACAGGTTGTCGAAGGCTAAGAAGGATCCCTGTGA ATTTGATTGGAAGGTTGAAGAAGTTAGAAGAATTGTTGATCGGGAAAGACAGCTTTCAGGGATGGGATGTTGTTGGGACAAGCACAGGAGGAATGAATGC AAGCCTAAAAGAACTAAATTCGTTGTCTCATTTAGCCGTATTATCATTGAGGATACCGAAGGTTGAATGCATTCCCAGAGATTTTGTTTTTCCAGTTAGG TTGCGCAAATATGATATAATATTAGGGTATGGGTTTGTGGCAGGACGATACCCAACCTCGACAAGATTAAATTTGGCTGGTACATCCTTAAATGCGAAGA CATTTGGGCAATTGTTTTTACATAAATTAGAATTTGTAAAAGTGAGGGATTGTGGGGATATTTTCACTCTGTTTCCAGCAAAATTGCTGCAAGTTTTGAA AAATCTAAAGGAGGTGATTGTTCACGGCTGTAAATCAGTGGAAGAGGTATTTGAATTGGGTGAGGCTGATGAAGGAAGCAGTGAGCAGATGGAGCTGCCG TTTCTGTCATCTTTAACAACGTTACAGCTGTCATGTTTATCTGAGCTCAAATGCATATGGAAGGGGCCCACCAGAAATGTCAGCCTCCAAAATCTTAATT TTCTGGCAGTTACGTTTCTCAACAAACTAACATTTATCTTCACAGCGTTCCTCGCTCAAAGTCTGTCAAAGCTAGAAAGTCTTTGCATAACAGATTGTCG TGAATTGAAACATATTATCAGAGAAGAGGATGGTGAAAGGAAAATAATTCCAAAGTCTCCTTACTTCCCAAAATTAAAAACTATCATCATAGAAGAGTGT GGTAAACTGGAATATGTCTTCTCTGTCTCTGTGTCTCTAACTCTTCAAAGTCTACCACAACTGCAAACACTTGAGATAAGAGATTGTGGTGAATTAAAGC ATATTATCAAAGAAGAGGATGGTGAAAAGGAAATAATTCCAGAGTCTCCTTGCTTCCCACAATTAAAAACTCTCCGTATATCTTACTGTGGTAAACTGGA ATATTTCTTCCCTGTCTCCATGTCTCTAACTCTTCCGAACCTGGAACAGATGACGATTTATGATGGTGACAATTTAAAGCAAATATTTTACAGTGGAGAA GGAGATGCACTCCCCAGAGATGACATCATCAAGTTCCCTCGGCTAAGAGAATTGTCTCTTCGGCTCAGATCAAATTACAGCTTTTTAAGTCCAAGGAATT TTGATGCTCAATTGCCTTTGCAAGAATTAACCATTGAAGGCCACGAAGAAGTGGGTAATTGGTTGGCACAGCTACAACAAAACGGCTTCTTACAAAGATT AGAATTTATACAAGTGGACGATTGTGGGGATGTTCGCACTCCGTTTCCAGCAAAATTGCTGCGAGCTTTGAAAAATCTAAGGAGGGTGAACATTTACAAC TGCAAATCATTGGAAGAGGTATTTGAATTAGGTGAGCTGCCTGATGAAGGAAGCAGTGAGGAGAAGGAGCTGCTGTCATCTTTAACAGGGTTATATCTAA AAAGGTTACCTGAGCTCAAATGCATATGGAAGGGGCCCACCAGACATGTCAGCCTTCGAAGTCTTGCTCATCTGTATCTGGATTCTCTCAACAAACTAAC ATTTATCTTCAAAGCGTCCCTCGCTCAAAATCTGTCAAAGCTAGAAAGACTTTACATAAGTAAATGCCGTGAATTAAAGCATATTATCAGAGAAGAGGAT GGTGAAAAGGAAATAATTCAAGAGTCTCCTTGCTTCCCAAAATTAAAAACTATCATCATAGAAGAGTGTGGTAAACTGGAATATGTCTTCCCTGTATCTG TGTCTCCAAGCCTTCTGAACCTGGAAGAGATGCGGATTTTGAATGCTCATAATTTAAAGCAAATATTTTACAGTGTAGAAGGAGATGCACTCACCAGAGA TGCCATCATCAAGTTCCCTAAGCTAAGAAGATTGTCTCTTTCAAATTGCAGCTTTTTTGGTCCAAAGAATTTTGCTGCCCAATTGCCTTCTTTGCAAATT CTAGAAATTGATGGCCACAAAGAATTGGGAAATTTGTTTGCACAGCTCGAAGGGTTGACAAATTTGGAAACATTACGCTTGGGCTCCCTGCTGGTGCCTG ACATTAGGTGTATATGGATGGGTCTCGTGCTAAGCAAATTGACTACTTTGAATGTGGTTGAGTGTAAAAGACTGACGCATGTATTCACACGCAGTATGAT TTTCAGTCTAGTTCCACTGAAAGTGCTAAAGATATTGTCCTGTGAGGAATTGGAGCAAATCATTGCTAAGGATGATGATGAAAACGACCAGATATTGTTA GGAGATCATCTCCAATCTTTATGCTTTCCCAATTTGTGTGAAATTGAGATTAGAGAATGCAACAAGTTGAAGAGTCTCTTCCCAGTAGCCATGGCTTCAG GTCTCCCAAATCTCCAAATACTGAGGGTAAAAAAAGCCTCTCAATTATTGGGAGTATTTGGGCAGGATGATCAAGCTTCACTTGTCAACGTTGAGAAGGA GATGATGCTTCCTAATCTAAAGGAGTTGTCGCTAGAACAATTATCAAGTATTGTCTGTTTTAGTTTCGGATGGTGTGATTATTTCTTATTTCCTCGTTTG GAGAAGTTGAAGGTCTATCAATGTCCAAAGCTGACCACAAAATTTGCCACTACACCAGATGGTTCAATGAGTGCTCAATCAAAGGTATCTGAAGTAGCTG AAGATTCAAGCATTAATAGAGAGTGGACCCGAGATAATGGGTGGGAAGAAGAAGAAGATGGTGATGATGATGATGATTGGTAG
AA sequence Show only first row Show all	>Potri.001G434000.11 pacid=42790003 polypeptide=Potri.001G434000.11.p locus=Potri.001G434000 ID=Potri.001G434000.11.v4.1 annot-version=v4.1 MALESAGGSIISKIAELMVEPVGRQFRYMFCFNTFVEEFKERKENLALALDGLQDDVEAAERNAKEIYEDVKQWLEDANNEIEGAKPLENEIGKNGKCFT WCPNCMRQFKLSKALAKKSETFRELGESSEKFKTVAHKAHPQPIEFLPSKEFTPLKSSEEAFEQIMEALKDDKVNMIGLCGMGGVGKTTLAKEVGRRAKE LQLFPEVLMATVSQNPNVTDIQDRMADKLGLDIKEKSREGRADRLRHILKEVEKMLIILDDVWKYIDLKEIGIPFGDDHRGCKILLTTRLQAICSSMECQ QKVLLRVLTEDEALVLFRIKAGLRDGDSTLNTVAREVARECQGLPIALVTVGRALRGKSEVEWEVAFRQLKNSQFLDMEHIDEQRTAYACLKLSYDYLKS KETKLCFLICCLFPEDYNIPIEDLTRYAVGYLIEDARKRVSVAIENLKDCCMLLGTETEEHVRMHDLVRDVAIRIASSKEYGFMVKAGIGLKEWPMSNKS FEGCTTISLMGNKLAELPEGLVCPKLEVLLLELDDGLNVPQRFFEGMKEIEVLSLKGGCLSLQSLELSTKLQSLMLITCGCKDLIWLRKLQRLKILGLMW CLSIEELPDEIGELKELRLLDVTGCRRLRRIPVNLIGRLKKLEELLIGKDSFQGWDVVGTSTGGMNASLKELNSLSHLAVLSLRIPKVECIPRDFVFPVR LRKYDIILGYGFVAGRYPTSTRLNLAGTSLNAKTFGQLFLHKLEFVKVRDCGDIFTLFPAKLLQVLKNLKEVIVHGCKSVEEVFELGEADEGSSEQMELP FLSSLTTLQLSCLSELKCIWKGPTRNVSLQNLNFLAVTFLNKLTFIFTAFLAQSLSKLESLCITDCRELKHIIREEDGERKIIPKSPYFPKLKTIIIEEC GKLEYVFSVSVSLTLQSLPQLQTLEIRDCGELKHIIKEEDGEKEIIPESPCFPQLKTLRISYCGKLEYFFPVSMSLTLPNLEQMTIYDGDNLKQIFYSGE GDALPRDDIIKFPRLRELSLRLRSNYSFLSPRNFDAQLPLQELTIEGHEEVGNWLAQLQQNGFLQRLEFIQVDDCGDVRTPFPAKLLRALKNLRRVNIYN CKSLEEVFELGELPDEGSSEEKELLSSLTGLYLKRLPELKCIWKGPTRHVSLRSLAHLYLDSLNKLTFIFKASLAQNLSKLERLYISKCRELKHIIREED GEKEIIQESPCFPKLKTIIIEECGKLEYVFPVSVSPSLLNLEEMRILNAHNLKQIFYSVEGDALTRDAIIKFPKLRRLSLSNCSFFGPKNFAAQLPSLQI LEIDGHKELGNLFAQLEGLTNLETLRLGSLLVPDIRCIWMGLVLSKLTTLNVVECKRLTHVFTRSMIFSLVPLKVLKILSCEELEQIIAKDDDENDQILL GDHLQSLCFPNLCEIEIRECNKLKSLFPVAMASGLPNLQILRVKKASQLLGVFGQDDQASLVNVEKEMMLPNLKELSLEQLSSIVCFSFGWCDYFLFPRL EKLKVYQCPKLTTKFATTPDGSMSAQSKVSEVAEDSSINREWTRDNGWEEEEDGDDDDDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G434000 [exp]	0	1	Pt-RGA-II24.63
					Potri.001G432333 [exp]	3.46	0.9504
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	6.32	0.9485
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426430 [exp]	6.78	0.8911
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	7.93	0.9366
AT4G27190			NB-ARC domain-containing disea...		Potri.001G420000 [exp]	8.94	0.9394
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	9.48	0.9423
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	16.43	0.9087
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	16.73	0.8978
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	20.97	0.8617
AT1G47530			MATE efflux family protein (.1...		Potri.002G132300 [exp]	23.49	0.8294

Compare expression of checked genes

Potri.001G434000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.