Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12210 100 / 3e-23 RFL1 RPS5-like 1 (.1) AT1G12280 99 / 1e-22 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47260 95 / 3e-21 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1) AT1G51480 95 / 4e-21 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 94 / 8e-21 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G27190 93 / 2e-20 NB-ARC domain-containing disease resistance protein (.1) AT5G43730 92 / 2e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61310 91 / 9e-20 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 91 / 1e-19 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G63350 90 / 2e-19 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G444050 [exp] 553 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445150 [exp] 538 / 0 AT4G27190 201 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446966 [exp] 512 / 0 AT4G27190 166 / 4e-44 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446016 [exp] 518 / 2e-177 AT4G27190 281 / 4e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 526 / 4e-177 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 511 / 3e-171 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 493 / 2e-164 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 487 / 6e-162 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 483 / 9e-160 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020016 [exp] 60 / 2e-09 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002247 [exp] 56 / 3e-08 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002945 [exp] 55 / 5e-08 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 55 / 6e-08 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042165 [exp] 54 / 1e-07 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 54 / 1e-07 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018937 [exp] 54 / 1e-07 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 54 / 2e-07 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 53 / 2e-07 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 53 / 2e-07 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G443932.1 pacid=42787959 polypeptide=Potri.001G443932.1.p locus=Potri.001G443932 ID=Potri.001G443932.1.v4.1 annot-version=v4.1 ATGCCTATTTTACTTTTAATGACTCACTCTCACAGTCGGCATTCTTATATCTCTAATTTTTCAGACTGGTGGAAAATGGCTATCGAAAGTGTTGGTGGAT CCATTGCATCTAAGATAGCAGAACTCTTGGTGGAACCAGCAATACGGCAGTTCCGTTACATGTTCTGTTTCTACAATTTTGTTCAAGAATTCGATGAACA AATGATGAACCTGGCTTTGGCATTTTATCGTCTGCAAGATGCTGTCGACGTTGCTAAAAGGAATGCTGAAGAAATTGAGATTGATGTCAACAAATGGCTG GAAGATGCAAAAAACGAAATTGAAGGTGTGAATCGTTTGCAAAATGAAAAAAGGGAAATTGGCAGTTGCTTTACTTGGTGTCCAAATTGGATGCGACAAT TCAAGTTAAGCAATGCACTGGCAAAGAAGACAGAGACTTTGAGAAAACTTGAAGAGAATAGCAGAAAGTTTCCAAAAGTGTCCCACAAAGCACCTCTTCA AGAGATAAAATTTCTTCCATCAAAGGAATTCATGCTCTCAAAATCGTCAGAAGAAGCTTTCGAACAGATTATGAAAGCTCTCAAAGATGACAATGTCAAT ATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTGGTGAATGAAGTGGGCAGGAGAGCCAAAGAGTTGCAGCTGTTTGATGAAGTTTTGA TGGCTACACTGTCCCAGAATCCAAACGTCATAGACATCCAGGATCGAAAGGCGGATCGTTTAGGTCTGCGTTTTGACAAAATGACCGAGGAAGGGAGAGC AGATCTATTATGGCAGAGACTGAAGACAGAGAAGAAGATACTTAATATCCTGGATGATGTTTGGAAAGATATTGACTTCCAAGAGATAGGGATCCCATTT GGTGATGATCACAGGGGTTGTAAGATTCTTCTAACAACACGTCATGAAGACATGTGTTCTTATATTAAGTGCAAGGAAAAAGTTTTTTTAGGTGTCTTTT CTGAAGAGGAAGCATGA
AA sequence Show only first row Show all	>Potri.001G443932.1 pacid=42787959 polypeptide=Potri.001G443932.1.p locus=Potri.001G443932 ID=Potri.001G443932.1.v4.1 annot-version=v4.1 MPILLLMTHSHSRHSYISNFSDWWKMAIESVGGSIASKIAELLVEPAIRQFRYMFCFYNFVQEFDEQMMNLALAFYRLQDAVDVAKRNAEEIEIDVNKWL EDAKNEIEGVNRLQNEKREIGSCFTWCPNWMRQFKLSNALAKKTETLRKLEENSRKFPKVSHKAPLQEIKFLPSKEFMLSKSSEEAFEQIMKALKDDNVN MIGLYGMGGVGKTTLVNEVGRRAKELQLFDEVLMATLSQNPNVIDIQDRKADRLGLRFDKMTEEGRADLLWQRLKTEKKILNILDDVWKDIDFQEIGIPF GDDHRGCKILLTTRHEDMCSYIKCKEKVFLGVFSEEEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	0	1
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.006G167700 [exp]	2.64	0.8522
AT3G26935			DHHC-type zinc finger family p...		Potri.001G070100 [exp]	6.63	0.8360
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	10.58	0.8163
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	11.22	0.8382
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	12.56	0.8394
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.008G097900 [exp]	14.45	0.8251
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	18.76	0.8301
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	23.36	0.7904
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	25.98	0.8268
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.005G134200 [exp]	30.16	0.8229

Compare expression of checked genes

Potri.001G443932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.