Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 225 / 5e-60 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 203 / 3e-53 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 200 / 3e-52 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12220 181 / 2e-46 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 181 / 4e-46 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61310 175 / 2e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 172 / 3e-43 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 169 / 2e-42 RFL1 RPS5-like 1 (.1) AT5G63020 167 / 9e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 167 / 1e-41 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G444500 [exp] 2088 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G447132 [exp] 1828 / 0 AT4G27190 254 / 3e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 1755 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 1735 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444050 [exp] 1701 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 1697 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 1655 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1633 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1628 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006794 [exp] 99 / 7e-21 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 100 / 8e-21 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10041243 [exp] 96 / 1e-19 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 96 / 2e-19 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 93 / 1e-18 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 93 / 1e-18 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 92 / 2e-18 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 92 / 2e-18 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 92 / 2e-18 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10022464 [exp] 91 / 4e-18 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G444000.7 pacid=42792770 polypeptide=Potri.001G444000.7.p locus=Potri.001G444000 ID=Potri.001G444000.7.v4.1 annot-version=v4.1 ATGGCTATCGAATGTGCTGCTGGATACATTATATCCAAGATAGCAGATCTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGCTAAAGAATTCAAAGAACAAAAGGAGCACCTGGTTTCGGTAAAAGATCGTCTGCAAGATGCTGTCCGAGTTGCTGAAAGGAATGCTGAAGAAAT TTACAAAGATGTCATCAAATGGCTGGAAGATGCAAACAACGGAATTGAAGGTGCGAAGCCTTTGGAAAATGATATAGAAAAAAATGGCAAATGCTTTACT TGGTGTCCAAACTGCATGCGACAATTCAAGTTAAGCATGGCACTGGCCAAGAAGTCGGAGACTTTCAGAAAACTTCAAGAAACTAGCACAAAGTTTACAA CAGTTTCCTGCAAAGCACCTCTTCCAGAGATAAAATTTCTTCCATCAAAGGAATTCACACTCTCAGGATCGTCAGAAGAAGCTTTCAAACAGATTATGAA AGTTCTCAAAGATGACAAGATCAATATGATCAGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTGGTGAAACAAGTAGCCAGGAGGGCCAAAGAG TTGCAGTTGTTTGATGAAGTTGTGATGGCTACACTGTCCCAGAATCCAAATGTCACAGGCATCCAGGATCAAATGGCAGATAGTTTAGGTCTGAAATTTG ACGAGAACAGTGAAGGAGGGAGAGCAGGTCGGTTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAGTCCTGGATGATGTTTGGAAAGATATTGACTT CCAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTAATCAAGAACTATGTTCTTATTTGGCGTGCCAGCAA AAAGTGTTGTTAAGTCCCTTTACTGAAATTGAAGCTTGGGCTTTATTCAAAAGCAACGCAGGTTTAAGTGATGAGGACTCTGACTTGAACAGAGTGGCAA AGGAGGTTGCGATAAAATGCCGAGGATTGCCTTTAGCTCTTGCGGCAGTAGGAAGGGCTCTAAAAGGTAAATCTAAAAATGAGTGGAAATTAGCATCTAA AAACCTCAAAACATCTCAATCTCGGCACATGGAAAACGTTGATGACCGAAGTAATCCATATGCATGTCTTAAATTGAGCTATGATTATTTGAAGCACGAT GAAACCAAGTTATGTTTCTTGCTATGCTGTTTATTTGAAGAAGATGACGACATTTCAATCGAGGGTTTGACGAGACTTGCAGTTGGCTACGGGTTACATC AAGATGTGGAGTCCATTGAAGATACAAGGGAACAAGTTTATGCGGAGATGAAAGCCCTCAAAGATAGGTGTATGCTGTTGGGCACTGAAATTGAAGAAAA TGTGAAAATGCATGACTTGTTTCGTGAAGTTGCTATTGAGATAGCAACTAAAGAATATGGATTCATGGTTAGTGCTGGCAATGGGTGGAAGAGTGTTAAT AACAGTGTTACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGAATTGGTGTGTCCACAGCTCAAAGTTCTTTTATTAGAACTGGATG ATGATTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGCAATAGAAGTTTTGTCTCTAAAGGGAGGGTGTTTGTCATTGCAATCACTTCAATTCTC AACGAACCTTCAATCGTTGCTGTTGATCGAGTGTAAATGCAAGGACCTCATTTCATTGAGAAAGCTGCAAAGACTTAAGATTCTTGTTTTCAGGTGGTGC GACTCCATTGAAGAATTACCTGATGAAATTGGGGAGCTCAAGGAGTTAAGGTTGTTGGATTTGACAAGTTGTGAAAATCTAAGAAGGATTCCTGTGAATT TGATAGGAAGGTTGAAGAAGTTAGAAGAACTGCTGATCGGGGATTTCAGCTTCAAGGGATGGGATGTTGTTGGATGTGACAGCACAGAAGGAATGAATGC AAGCCTAACAGAACTAAATTCGCTGTCTCATTTAGCTGTATTATCATTGAAGATACCGAAGGTTGAATGCATTCCCAGAGATTTTGTTTTTCCCAGGTTG CTCAAATATGATATAGTGTTAGGGGATTGGTATTCAGAACTCGATAAAGAATACCCAACCTCGACAAGATTATATTTGGGTGATATAAGCGCCACATCCT TAAATGCAAAGACATTTGAGCAGTTGTTTCCTACTGTGTCTCATATTTGTTTTTGGAGAGTGGAGGGTTTAAGAAATATAGTATTGTCCTCTGATCAGAT GACCACCCATGGCCATGGGTCGCAAAAGGACTTCTTACAAAGATTAGAATATGTCAAAGTGAAACAATGTGGGGATATTCGCACTCTGTTTCCAGCAAAA TGGCGGCAAGCTTTGAAAAATCTAAGGAGAGTGAAAACTTATGATTGCAAATCATTGGAAGAGGTATTTGAATTTGATGAGGCTGAAGAAGGAATTAACA AGGAGAAGGAGCTGCCGCTACTGTCATCTTTAACAACGTTACGGTTGTCAGATTTACCTGAGCTCAAATATATATGGAAGGGGCCCACTAGACATGTCAG CCTCCAAAGTCTTATTTATCTGAAGTTGTCGTCTCTTAACAAACTGACATTTATCTTCACACCGTCCCTCGCTCAAAGTCTTATTCATCTGGAAACACTA GAGATAGCACATTGCGATGAATTGAAGCATCTTATCAGAGAACAGGATGACGAAATGAGGACAGAGTCTCTTGGCTTCCCGAAACTAAAAACTCTCTCTA TAAGATTCTGTGGTAAACTTGAATATGTTTTCCCTGTCTCCGTGTCTCCAAGTCTTCAGAACCTGGAAGAGATGGAGATTGATTTTGCTGACAATTTAAA GCAAGTATTTTACAGTGGAGAAGGAGATGACGTCATCGTCAAGTCTAAAATTAAAGATGGCATCATCGACTTCCCTCAGCTAAGAAAATTGTCTCTTTTT TCCGTATCAAGTTGCAGCTTTTTTGGTCCAAAGGATTTTGCTGCCCAATTGCCTTCTTTGCAAGAGTTAACCATTGATGGCCTCGAAGAATGGGGTAATT TGTTGGCACAGCTTCGAGGGCTTACAAGTTTGGAAACATTAGAGTTGTCCTTCCTGCTTGTGCCTGACTTGAGGTGTATATGGAAGGGTCTCGTGCCATG CAATTTGACTACTTTGAAGGTGAAAAAGTGTGAGAGACTGACACATGTATTCACAAACAGCATGATTGCTAGTCTAATTCAACTGAAAATTCTAGAGATA TCAAATTGTGAGGAATTGGAGCAAATTATTGCTAAGGATAATGATGATGAAAAGGATCAGATATTGTCAGGAAGTGATCTCCAATCTTCATACTTCCCTA ATTTGTGTCAACTTGAGATTAGAGGATGCAACAAGTTGAAGAGTCTCTTCCCGGTAACCATGGCTTCAGGTCTCAAAAAGCTCCAAATACTTGAAGTAAG AGAATCTTCTCAATTATTGGGAGTATTTGGGCAAGATAACCATGCTTCACCTGCCAATATTGAGAAGGAGATGGTGCTCACTGATCTGCAGGAGTTGTTG CTTGTACAATTACCAAATATTTCCCGCTTTAGTCTCGGATGTTATGATTTCTTGTTCCCTCATTTGAAGAAGTTGGAGGTGGATGGATGCCCAAAGCTGA CCACAGAATCTGCTACTACATCAAATGACTCAATGAGTGCTCAATCAAAGGGGTTTATGAATTTGAAAGAACTATCTATTGCAAACTTGGAAGGAGTACA AGATTTAACGCAAGTTGGATGTTTGGTAAGTAATAGAAGAGGTGGGCATGAACTTTCACTCGTGAGTTTGGAAACATTACGCTTGAAATTATTGCCAGAC TTGAGGTGTATATGGAAGGTTCTCGTGCCATGCAATTTGACTACTTTGAAGGTGAAAAAGTGTGAGAGACTGACACATGTATTCACAGATAGCATGATTG CTAGTCTAGTTCAACTGAAAGTTCTAGAGATATCAGCTTGTGAGGAATTGGAGCAAATCGTTGCTAAGGATAATGATGATGAAAAGGATCAGATATTTTC AGGAAGTGATCTCCAATCTGCATGTTTTTCTAATTTGTGTCGACTTGAGATCAGAGGATGCAACAAGTTGAAGAGTCTCTTCCCGGTAGCCATGGCTTCA GGTCTCAAAAAGCTCAAAATACTTGAAGTAAGTGAATCCTCTCAATTATTGGGAGTATTTGGGCAGGATGATCATGCTTCACCTGTCAATATTGAGAAGG AGATGGTGCTCCCTGATCTGAAGTTGCTGATTCTAGAAAAATTACCAAGCATTGTCTACTTCAGTCATGGATGTTGTGATTTCATATTCCCTTGTTTGTC GATATTGGTGGTGCGTCATTGTCCAAAGCTGTCCACAAGATTTGCTACTACATCAAATGATTTAATGAGTGCTCAATCAAAGGTATCTCAAGTAGTTGAG GATTCAAGTACTGGTTGCTCCGTGCCAACCAGCACTGCTATAAGATGGACCCGGGAATATGGGTGGGAATTGAAAGAGGAAGAGGATGGAGTCAGATGA
AA sequence Show only first row Show all	>Potri.001G444000.7 pacid=42792770 polypeptide=Potri.001G444000.7.p locus=Potri.001G444000 ID=Potri.001G444000.7.v4.1 annot-version=v4.1 MAIECAAGYIISKIADLMVEPVGRQFRYMFCFNNFAKEFKEQKEHLVSVKDRLQDAVRVAERNAEEIYKDVIKWLEDANNGIEGAKPLENDIEKNGKCFT WCPNCMRQFKLSMALAKKSETFRKLQETSTKFTTVSCKAPLPEIKFLPSKEFTLSGSSEEAFKQIMKVLKDDKINMIRLYGMGGVGKTTLVKQVARRAKE LQLFDEVVMATLSQNPNVTGIQDQMADSLGLKFDENSEGGRAGRLWQRLQGKKMLIVLDDVWKDIDFQEIGIPFGDDHRGCKILLTTRNQELCSYLACQQ KVLLSPFTEIEAWALFKSNAGLSDEDSDLNRVAKEVAIKCRGLPLALAAVGRALKGKSKNEWKLASKNLKTSQSRHMENVDDRSNPYACLKLSYDYLKHD ETKLCFLLCCLFEEDDDISIEGLTRLAVGYGLHQDVESIEDTREQVYAEMKALKDRCMLLGTEIEENVKMHDLFREVAIEIATKEYGFMVSAGNGWKSVN NSVTTISLMGNKLAELPEELVCPQLKVLLLELDDDLNVPERFFEGMKAIEVLSLKGGCLSLQSLQFSTNLQSLLLIECKCKDLISLRKLQRLKILVFRWC DSIEELPDEIGELKELRLLDLTSCENLRRIPVNLIGRLKKLEELLIGDFSFKGWDVVGCDSTEGMNASLTELNSLSHLAVLSLKIPKVECIPRDFVFPRL LKYDIVLGDWYSELDKEYPTSTRLYLGDISATSLNAKTFEQLFPTVSHICFWRVEGLRNIVLSSDQMTTHGHGSQKDFLQRLEYVKVKQCGDIRTLFPAK WRQALKNLRRVKTYDCKSLEEVFEFDEAEEGINKEKELPLLSSLTTLRLSDLPELKYIWKGPTRHVSLQSLIYLKLSSLNKLTFIFTPSLAQSLIHLETL EIAHCDELKHLIREQDDEMRTESLGFPKLKTLSIRFCGKLEYVFPVSVSPSLQNLEEMEIDFADNLKQVFYSGEGDDVIVKSKIKDGIIDFPQLRKLSLF SVSSCSFFGPKDFAAQLPSLQELTIDGLEEWGNLLAQLRGLTSLETLELSFLLVPDLRCIWKGLVPCNLTTLKVKKCERLTHVFTNSMIASLIQLKILEI SNCEELEQIIAKDNDDEKDQILSGSDLQSSYFPNLCQLEIRGCNKLKSLFPVTMASGLKKLQILEVRESSQLLGVFGQDNHASPANIEKEMVLTDLQELL LVQLPNISRFSLGCYDFLFPHLKKLEVDGCPKLTTESATTSNDSMSAQSKGFMNLKELSIANLEGVQDLTQVGCLVSNRRGGHELSLVSLETLRLKLLPD LRCIWKVLVPCNLTTLKVKKCERLTHVFTDSMIASLVQLKVLEISACEELEQIVAKDNDDEKDQIFSGSDLQSACFSNLCRLEIRGCNKLKSLFPVAMAS GLKKLKILEVSESSQLLGVFGQDDHASPVNIEKEMVLPDLKLLILEKLPSIVYFSHGCCDFIFPCLSILVVRHCPKLSTRFATTSNDLMSAQSKVSQVVE DSSTGCSVPTSTAIRWTREYGWELKEEEDGVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	1.73	0.9031
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	5.47	0.8985
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	5.47	0.9110
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	6.24	0.8724
					Potri.001G444875 [exp]	16.09	0.8498
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122200 [exp]	16.73	0.8946
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	16.91	0.8764
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	17.32	0.8546
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.004G031700 [exp]	21.02	0.8532	PtrcCXXS1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003600 [exp]	22.27	0.8543

Compare expression of checked genes

Potri.001G444000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.