Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26090 261 / 5e-72 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT4G27220 261 / 6e-72 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 261 / 8e-72 NB-ARC domain-containing disease resistance protein (.1) AT1G61180 222 / 2e-59 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12280 218 / 6e-58 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 216 / 2e-57 RFL1 RPS5-like 1 (.1) AT1G61190 210 / 3e-55 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61300 205 / 1e-54 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 207 / 3e-54 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 205 / 5e-54 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G446332 [exp] 2176 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1945 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 1798 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 1783 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 1769 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 1761 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1703 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1701 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446016 [exp] 1561 / 0 AT4G27190 281 / 4e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 120 / 5e-27 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 114 / 4e-25 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 112 / 2e-24 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 112 / 2e-24 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 111 / 3e-24 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 108 / 2e-23 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 108 / 2e-23 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 107 / 4e-23 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 107 / 5e-23 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 105 / 5e-23 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G444050.1 pacid=42788263 polypeptide=Potri.001G444050.1.p locus=Potri.001G444050 ID=Potri.001G444050.1.v4.1 annot-version=v4.1 ATGAGCAGCTCGTATCATTCGTGCAGGTGTCAAAGTGATCATCATCAACCTTCCATACAGAGAGACTGGTGGAAAATGGCTATCGAAAGTGTTGGTGGGT CCGTTGTATCTAAGATAGCAGAGCTCTTGGTGGAACCAGCAATCAAGCAGTTCCGTTACATGTTCTGTTTCAACAATTTTGTTCAAGAATTCGATGAACA AATGATGAACCTGGCTTTGGCATTTTATCGTCTGCAAGATGCTGTCAACGTAGCTGAAAGGAATGCTGAAGAAATTGAGATTGATGTCAACACATGGCTG GAAAATGCAAAAAACGAAATTGAAGGTGTGAATCGTTTGCAAAATGAAAAAGGAAAAATCATCAAATGCTTTACTTGGTGTCCAAATTCGATGCGACAAT TCAAGTTAAGCAAGGCACTGGCAAAGAAGACGGAGACTTTGAGAAAACTTGAAGAAAATAGCAGAAAGTTTCCAAAAGTGTCCCACAAAGCACCTCTTCA AGAGATAAAATTTCTTCCATCAAAGGAATTCACACTCTCAGGATCGTCAAAAGAAGCTTTCAAACAGATTATGAAAGCTCTCAAAGATGACAAGGTCAAT ATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTGGTGAAAGAAGTAGGCAGGAGAGCCAAAGAGTTGCACCTTTTTGATGAAGTTTTGA TAGCTACGGTGTCCCAGAATCCAAATGCCACAGGCATCCAGGATCAAATGGCAGATAGTTTAGATCTGCAATTTGACAAGAAGAGTAAAGAAGGGAGAGC AAAAGAACTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAGTCCTGGATGATGTTTGGAAAGATATTGACTTCCAAGAGATAGGGATCCCATTTGGT GATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTGAAGACATGTGTTCTTATATGAAGTGCAAGGAAAAAGTTTTTTTATGTCTCTTTTCTA AAGAGGAAGCATGGGCTTTATTCAGAATCAATGCAGCTTTACGTGACGAGGACTCTACCTTGAACAGGGTGGCAAAGAAGGTTGCGAGAGAATGTAATGG ATTGCCTGTAGCACTTGTGACAGTGGGAAGGGCTCTAAGAGATAAATCTGTTGTTGAGTGGGAAGTAGCGTCTGAAGAGCTCAAAAACTCTCAATTTCGG CATTTGGAACAAATTGACGGACAAAAAAATGCATATGCATGTCTTAAGTTGAGCTATGATTATTTGACGTCCGATGAAACCAAGTCATGTTTCTTGCTAT GCTGTTTATTTCCAGAAGATTACGACATTCCGATTGAGGACTTGACGAGATACGCAGTTGGCTATGGGTTACATAAAGATGCGGAGTCCATTGAAGATGC AAGGAAACGAGTTTATGTGGCAATCAAAAACCTCAAAGCTTGTTGTATGCTGTTAGGAACTTTTAGTGAAGAATATGTCAAAATGCATGACTTGGTTCGT GATGTTGCTATTCGGATAGCATCATCAGAAAAATACGGATTCATGGTAAAGGCTGGCATTGGGTTGCTAGAGTGGCCAACGAGCAATAAAAGCTTTGAAG GTTGTACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTGTGTCCACAGCTCAAAGTTCTATTGTTAGGACTGGATCGTGG TTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGCAATAGAAGTTTTGTCTCTAAAGGGAGGGTGTTTGTCATTGCAATCACTTCAATTCTCAACG AACCTTCAATCGTTGCTGTTGATCGAGTGTGAATGCAAGGACCTCATTTGGTTGAGAAAGCTGCAAAGACTTAATATTCTTGTTTTCAGGCGGTGCGGCT CCATTGAAGAATTACCTGATGAAATTGGGGAGCTCAAGGAGTTGAGGTTGTTGGATTTGACAGGTTGTGAAAATCTAAGAAGGATTCCTGTGAATTTGAT AGGAAGGTTGAAGAAGTTAGAAGAACTGCTGATCGGGGATCGGAGCTTCAAGGGATGGGATGTTGTTGGATGTGACAGCACAGAAGGAATGAATGCAAGC CTAACAGAACTAAACTCGTTGTCTCATTTAGCTGTATTATCATTGAAGATACCGAAGGTTGAATGCATTCCCAGAGATTTTGTTTTTCCCAGGTTGCTCA AATATGATATAGTGTTAGGGGATTGGTATTCAGGACCCCATAAAGAATACCCAACCTCGACAAGATTATATTTGGGTGATATAAGCGCCACATCCTTAAA TGCAAAGACATTTGAGCAGTTGTTTCCTACCGTGTCTCATATTTGGTTTTGGAGAGTGGAGGGTTTAAGAAATATAGTATTGTCCTCTGATCAGATGACC TCCCATGGCCATGGGTCGCAAAAGGACTTCTTTCAAAGATTAGAATATGTAGCAGTGAGAGAATGTGATGATATTCGCACTCTGTTTCCAGCAAAATGGC GGCAAGCTTTGAAAAATCTAAGGAGAGTGGAAATTGAAGACTGCCAATCATTGGATGAAGGAATTAACGAGGAGAAGGAGCTGCCATTTTTAACGGAGTT ACAGCTGTCCTGGTTACCTGAGCTCAAATGTATATGGAAGGGGCCCACTAGACATGTCAGCCTCCAAAGTCTTACTCGTCTGGAGCTCAGATGTCTTAAC AAACTGACATTTATCTTTACTCCGTCCCTCGCTCAAAGTTTTATTCATCTGGAAACGCTACGGATAGAAAATTGCCATGGATTGAAGCGTCTTATCAGAG AACAGGATGACGAAATCAGGACAGAGTCTCTTGGCTTCCCAAAATTAAAAAATCTCTCTATAATATTCTGTGATAAACTTGAATATGTCTTCCCTGTCTC CGTGTCTCCAAGTCTTCAGAACCTGGAAGAGATGCAGATTGTTTTTGCTGACAATTTAAAGTCTCTTGTATTTTACAGTGGAGAAGGAGATGACATCATC GTCAAGTCTAAAATTAAAGATGGCATCATCGACTTCCCTCAGCTAAGAGAATTGTCTCTTTCAAAGTGCAGCTTTTTTGGTCCAAAGGATTTTGCTGCCC TATTGCCTTCTTTGCAATGTCTAAGGATCTCTGGCCTTGAAGAATGGGGTAATTTGTTGGCACAGCTTCGAGGGTTTACAAGTTTGGAAACATTGAAGTT GTCCTCCCTGCTTGTGCCTGACTTGAGGTGTATATGGAAGGGTCTCGTGCCATGCAATTTGACTACTTTGGAGGTGAAAGAGTGTAAGAGGCTGACACAT GTATTCACAGACAGCATGATTGCTAGTCTTGTTCAACTGAAAGTTCTAGAGATATCAAATTGTGAGGAATTGGAGCAAATCATTGCTAAGGATAATGATG ATGAAAAGGATCAGATATTTTCAGGAAGTGATCTCCAATCTGCATGCTTTCCTAATTTGTGTCGACTTGAGATTAGAGGATGCAACAAGTTGAAGAAGTT GGAGGTGGATGGATGCCCAAAGCTGACCATAGAATCTGCTACTACATCAAATGACTCAATGAGTGGTCAATCAGAGGGGTTTATGAATTTGAAAGAAATA TCTATTGGAAACTTGGAAGGAGTACAAGATTTAATGCAATTTGAACGTTTGGTAACTAATAGAAGAGGTGGGCATGAACTTTCACTCGTGAGTTTGGAAA CATTACAGTTGAACTTATTGCCTGACTTGAGGTGTATATGGAAGGGCCTAGTGCCGAGCAATTTGACTACTTTGAAGGTGAAAAGGTGTAACAGACTGAC ACATGTATTCACAGACAGCATGATTGCTAGTCTAGTTCAACTGAAAGTTCTAGAGATATCAAACTGTGAGGAATTGGAGCAAATCATTGCTAAGGATAAT GATGATGAAAAGGATCAGATATTTTCAGGAAGTGATCTCCAATCTGCATGCTTTCCTAATTTGTGTCGACTTGAGATCAGAGGATGCAACAAGTTGAAGA GTCTCTTCCCAGAAGCCATGGCTTCAGGTCTCAAAAAGCTCCAAATACTTAAAGTAAGAGAATCCTCTCAATTATTGGGAGTATTTGGGCAGGATGATCA TGCTTCACCTGTCAATGTTGAGAAGGAGATGATGCTCCCTGATCTGCAGGAGTTGTTGCTTGTACAATTACCAAGTATTTCCTGCTTTAGTCTCGGATGT TATGATTTCTTGTTCCCTCATTTGAAGAAGTTGGAGGTGGATGGATGCCCAAAGCTGACCACAGAATCTGCTACTACATCAAATGACTCAATGAGTGCTC AATCAGAGGGGTTTATGAATTTGAAAGAAATATCTATTGGAAACTTGGAAGGAGTACAAGATTTAATGCAAGTTGGACGTTTGGTAACTAATAGAAGAGG TGGGCGTGAACTTTCACTCGTTAGTTTGGAAACATTACGCTTGAACTTATTGCCAGACTTGAGGTGTATATGGAAGGGTATCCTGCCGAGCAATTTGACT ACTTTGAAGGTGAACGACTGTAAGAGACTGACACATGTATTCACAGACAGCATGATTGCTAGTCTAGTTCAACTGAAAGTTCTAGAGATATCAGCTTGTG AGGAATTGGAGCAAATCGTTGCTAAGGATAATGATGATGAAAAGGATCAGATATTTTCAGGAAGTGATCTCCAATCTGCATGCTTTCCTAATTTGTGTCG ACTTGAGATTAGAGGATGCAACAAGTTGAAGAAGTTGGAGGTGGATGGATGCCCAAAGCTGACCATAGAATCTGCTACTACATCAAATGACTCAATGAGT GGTCAATCAGAGGGGTTTATGAATTTGAAAGAAATATCTATTGGAAACTTGGAAGGAGTACAAGATGTTAGCGTGAGCTGTACAGTTTAG
AA sequence Show only first row Show all	>Potri.001G444050.1 pacid=42788263 polypeptide=Potri.001G444050.1.p locus=Potri.001G444050 ID=Potri.001G444050.1.v4.1 annot-version=v4.1 MSSSYHSCRCQSDHHQPSIQRDWWKMAIESVGGSVVSKIAELLVEPAIKQFRYMFCFNNFVQEFDEQMMNLALAFYRLQDAVNVAERNAEEIEIDVNTWL ENAKNEIEGVNRLQNEKGKIIKCFTWCPNSMRQFKLSKALAKKTETLRKLEENSRKFPKVSHKAPLQEIKFLPSKEFTLSGSSKEAFKQIMKALKDDKVN MIGLYGMGGVGKTTLVKEVGRRAKELHLFDEVLIATVSQNPNATGIQDQMADSLDLQFDKKSKEGRAKELWQRLQGKKMLIVLDDVWKDIDFQEIGIPFG DDHRGCKILLTTRLEDMCSYMKCKEKVFLCLFSKEEAWALFRINAALRDEDSTLNRVAKKVARECNGLPVALVTVGRALRDKSVVEWEVASEELKNSQFR HLEQIDGQKNAYACLKLSYDYLTSDETKSCFLLCCLFPEDYDIPIEDLTRYAVGYGLHKDAESIEDARKRVYVAIKNLKACCMLLGTFSEEYVKMHDLVR DVAIRIASSEKYGFMVKAGIGLLEWPTSNKSFEGCTTISLMGNKLAELPEGLVCPQLKVLLLGLDRGLNVPERFFEGMKAIEVLSLKGGCLSLQSLQFST NLQSLLLIECECKDLIWLRKLQRLNILVFRRCGSIEELPDEIGELKELRLLDLTGCENLRRIPVNLIGRLKKLEELLIGDRSFKGWDVVGCDSTEGMNAS LTELNSLSHLAVLSLKIPKVECIPRDFVFPRLLKYDIVLGDWYSGPHKEYPTSTRLYLGDISATSLNAKTFEQLFPTVSHIWFWRVEGLRNIVLSSDQMT SHGHGSQKDFFQRLEYVAVRECDDIRTLFPAKWRQALKNLRRVEIEDCQSLDEGINEEKELPFLTELQLSWLPELKCIWKGPTRHVSLQSLTRLELRCLN KLTFIFTPSLAQSFIHLETLRIENCHGLKRLIREQDDEIRTESLGFPKLKNLSIIFCDKLEYVFPVSVSPSLQNLEEMQIVFADNLKSLVFYSGEGDDII VKSKIKDGIIDFPQLRELSLSKCSFFGPKDFAALLPSLQCLRISGLEEWGNLLAQLRGFTSLETLKLSSLLVPDLRCIWKGLVPCNLTTLEVKECKRLTH VFTDSMIASLVQLKVLEISNCEELEQIIAKDNDDEKDQIFSGSDLQSACFPNLCRLEIRGCNKLKKLEVDGCPKLTIESATTSNDSMSGQSEGFMNLKEI SIGNLEGVQDLMQFERLVTNRRGGHELSLVSLETLQLNLLPDLRCIWKGLVPSNLTTLKVKRCNRLTHVFTDSMIASLVQLKVLEISNCEELEQIIAKDN DDEKDQIFSGSDLQSACFPNLCRLEIRGCNKLKSLFPEAMASGLKKLQILKVRESSQLLGVFGQDDHASPVNVEKEMMLPDLQELLLVQLPSISCFSLGC YDFLFPHLKKLEVDGCPKLTTESATTSNDSMSAQSEGFMNLKEISIGNLEGVQDLMQVGRLVTNRRGGRELSLVSLETLRLNLLPDLRCIWKGILPSNLT TLKVNDCKRLTHVFTDSMIASLVQLKVLEISACEELEQIVAKDNDDEKDQIFSGSDLQSACFPNLCRLEIRGCNKLKKLEVDGCPKLTIESATTSNDSMS GQSEGFMNLKEISIGNLEGVQDVSVSCTV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446016 [exp]	1.41	0.9478
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	2.44	0.9468
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	7.48	0.9430
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088600 [exp]	9.84	0.8368
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	10.19	0.8922
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	11.40	0.9185
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G022728 [exp]	12.00	0.9136
					Potri.001G432540 [exp]	13.74	0.8963
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	13.85	0.9220
					Potri.001G444875 [exp]	14.28	0.8648

Compare expression of checked genes

Potri.001G444050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.