Potri.001G444500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27190 241 / 6e-65 NB-ARC domain-containing disease resistance protein (.1)
AT4G27220 234 / 4e-63 NB-ARC domain-containing disease resistance protein (.1)
AT4G26090 223 / 1e-59 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1)
AT1G61180 212 / 5e-56 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
AT1G61310 207 / 2e-54 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT5G63020 206 / 5e-54 Disease resistance protein (CC-NBS-LRR class) family (.1)
AT1G61190 206 / 6e-54 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT1G12280 202 / 6e-53 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT1G12220 197 / 3e-51 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT5G05400 194 / 2e-50 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G447132 2368 / 0 AT4G27190 254 / 3e-69 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G444000 2080 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G429660 1833 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G445700 1788 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G446650 1776 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G419800 1773 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G420000 1743 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G443400 1729 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G446332 1710 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039509 116 / 1e-25 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10002945 110 / 9e-24 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10041243 108 / 2e-23 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10039540 108 / 2e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Lus10026132 107 / 1e-22 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10020016 105 / 2e-22 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10005218 104 / 4e-22 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Lus10024173 100 / 9e-21 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10022464 100 / 1e-20 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1)
Lus10022351 100 / 1e-20 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00931 NB-ARC NB-ARC domain
Representative CDS sequence
>Potri.001G444500.3 pacid=42792588 polypeptide=Potri.001G444500.3.p locus=Potri.001G444500 ID=Potri.001G444500.3.v4.1 annot-version=v4.1
ATGGCTATCGAAAGTGTTGGTGGATCCGTTGTATCCAAGATAGCAGAGCTCTTGGTGGAACCAGCAATAAGGCAGTTCCGTTACATGTTCTGTTTCAACA
ATTTTGTTCAAGAATTCAATGAACACAAGAAGAACCTGGCTTTGACACTAGATCGTCTACAAAATGATGTCCGAGATGCTGAAAGGAATGCTGAAGAAAT
TTACAAATATGTCAGTAAATGGCTGGAAGATGCAAACAACGAAATTGAAGGTGTGAATCCTTTGGAAAATGAAATAGAAAAAAATGGCAAATGCTTCACT
TGGTGTCCAAATTGGACGCGACAATTCAAGTTAAGCAAGGCACTGGCAAAGAAAACGGAGACTTTGAGAAAACTTGAAGAAAATGGCAGAAAGTTTCCAA
AAGTGTCCTACAAACCACCTCTTCAAGGCATAGAATTTCTTCCATCAGAGGAAGTCACGCCTTCAGAATCGTCAAAAGCAGCTTTCGAACAGATTATGAA
AGCTCTCAAAGATGACAATGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACTCTAGTGAAAGAAGTAGGAAGGAGAGCCAAAGAG
TCGCAGCTGTTTGATGAAGTTGTGATGGCTACACTGTCCCAGAATCCAAAGGTCACAGGCATCCAGGATCAAATGGCAGATAGTTTAGGTCTGAAATTTG
ACGAGAACAGTGAAGGAGGGAGAGCAGGTCGGTTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAGTCCTGGATGATGTTTGGAAAGATATTGACTT
CCAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTCAAGACATATGTTCTTATATGGAGTGCCAGCCA
CAAGTGTTCTTAAATATCTTAACAGAAAATGAAGCATGGGCTTTATTCAAAATCCATGCAGGTTTACGTGATGAGGACTCTGACTTGAACAGAGTGGCAA
AGGACGTTGCGAGAGAATGCCAAGGCTTGCCTATAGCACTTGTGGCAGTGGGAAAGGCTCTAAAAGATAAATCTGAACATGAGTGGGAAGTAGCATCTGA
AGAGCTCAAAAAATCTCAATCTCGGCACGTGGAAAATTTTGATGACCGAAGAAATGCATATGCATGTCTTAAATTGAGCTATGATTATTTGAAGCACGAG
AAAACCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACAACATTCCAATCGAGGAGTTGACGAGATGTGCAGTTGGCTACGGGTATCAAG
ATGTGAAGTCCATTGAAGGTGCAAGGAAACGAGTTTATATGGAAATCGAAAACCTCAAAGCTTGTTGTATGCTGTTAGGAACTGAAACTGAAGAATATGT
GAAAATGCATGACTTGGTTCGTGATGTTGCTATTCAGATAGCATCATCAGAAAAATACGGATTCATGGTAGAGGCTGGCTTTGGGTTGAAGGAGTGGCCA
ATGAGGAATAAAAGCTTTGAAGGTTGTAAAGTAATCTCGTTAATGGGCAATAAACTAACAGATCTTCCTGAAGGATTGGTGTGTCCACAGCTCAAAGTTC
TATTATTAGAACTGGATCGTGGTTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGCAATAGAAGTTTTGTCTCTAAAAGGAGGGTGTTTGTCATT
GCAATCACTTCAATTCTCAACGAACCTTCAGTCGTTGCTGTTGAGATGGTGTGAATGCAAGGACCTCATTTGGTTGAGAAAGCTGCAAAGACTTGAGATT
CTTGGTTTCATTTGGTGCGGCTCCGTTGAAGAATTACCTAATGAAATTGGGGAGCTCAAGGAGTTAAGGTTGTTGGATGTGACAGGTTGTGGATTGCTAA
GAAGGATTCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAGCTGTTGATCGGGGCTACGAGCTTCAACAGATGGGATGTTGTTGGATGTGACAG
CGCAGAAGGAATGAATGCAAGCCTAACAGAACTAAGTTCGCTGTCTCATTTAGCTGTATTATCATTGAAGATACCGAAGGTTGAATGCATTCCCAGAGAT
TTTGTTTTTCCCAGGTTGCTCAAATATGATATAGTGTTAGGGGATGGGTATTCGGAAGGAGTATACCCAACAAAATTATATTTGGGTAATATCAGCACCG
CATCCTTAAATGCAAAGACATTTGAGCAATTGTTTCCTACTGTGTCTCTAATTGATTTTAGAAACATTGAGGGTTTAGAAAATATAGTAGAGTCGCAAAA
GGACTTCTTTCAAAGATTAGAACATGTAGAAGTGACAGGATGTGGGGATATTCGCACTCTGTTTCCAGCAAAATGGCGGCAAGCTTTGAAAAAACTAAGG
AGCGTGGAAATTAAAAGATGCGATTCATTGGAAGAAGTATTTGAATTGGATGAGGAGAAAGAGCTGCTGTCATCTTTAACAACGTTACGGTTGTCAGATT
TACCTGAGCTCAAATGTATATGGAAGGGGCCCACCAGACATGTCAGCCTCCACAGTCTTGTTCATCTGAAGTTGTTGTGTCTTGACAAACTGACATTTAT
ATTCACACCGTCCCTTGCTCAAAGTCTTATTCATATGGAAACACTTGAGATAGGATTTTGCCGTGGATTGAAGCGTCTTATCAGAGAGAAGGATGACGAA
GGGGAAATAATTCCAGAGTCTCTTGGCTTCCCAAAATTAAAAAAACTCTATATATTTGTTTGTGATAAACTGGAATATGTTTTCCCTGTCTCCGTGTCTC
CAAGTCTTCAGAACCTGGAAGAGATGAAGATTGTTTTTGCTGACAATTTAAAGCAAGTATTTTACAGTGGAGAAGGAGATGACATCATCGTCAAGTCTAA
AATTAAAGATGGCATCATCGACTTCCCTCAGCTAAGAAAATTGTCTCTTTCAAAGTGCAGCTTTTTTGGTCCAAAGGATTTTGCTGCCCAATTGCCTTCT
TTGCAAGAGTTAACCATTTATGGCCACGAAGAAGGGGGTAATTTGTTGGCACAGCTTCGAGGGTTTACAAGTTTGGAAACATTAACTTTGTCCTACGTGC
TTGTGCCTGACTTGAGGTGTATATGGAAGGACCTCATGCCGAGCCATTTGACTTCTTTGACGGTGTATAGCTGTAAGAGACTGACACGTGTATTCACACA
TAGCATGATTGCTAGTCTTGTTCAACTGCAAGTTCTAGAGATATCAAATTGTGAGGAATTGGAGCAAATCATTGCTAAGGATAATGATGATGAAAATGAT
CAGATATTGTCAGGAAGTGATCTCCAATCTTCATGCTTCCCTAATCTGTGGCGACTTGAGATCAGAGGATGCAACAAGTTGAAGAGTCTCTTCCCAGTAG
CCATGGCTTCAGGTCTCAAAAAGCTCCGAATACTTAGAGTAAGAAAATCCTCTCAATTATTGGGAGTATTTGGACAGGATGATCATGCTTCACCTGCCAA
TATTGAGAAGGAGATGGTGCTCCCTGATCTGCAGGAGTTGTTGCTTGTACAATTACCAAGTATTTCCTCCTTTAGTCTCGGATGTTCTAATTTCTTGTTC
CCTCATTTGAAGAAGTTGGAGGTGGATGGATGCCCGAAGCTGACCACAAAATCTGCTACTACATCAAATGACTCAATGAGTGCTCAATCAAAGGCGTTTA
TGAATTTGAAAGAAATATCTATTGGAAACTTGGAAGGAGTACAAGATTTAATGCAAGTTGGACGTTTGGTAACTAATAGAAGAGGTGGGCATGAACTTTC
ACTCGTGAGTTTGGAAACATTATGCTTGAACTTATTGCCAGACTTGAGGTGTATATGGAAGGGTCTCGTTCCGAGCAATTTGACTACTTTGAAGGTGAAA
GAGTGCAAGAGACTGACACATGTATTCACAGACAGCATGATTGCTAGTCTAATTCAACTTCAAGTTCTAGAGATATCAAATTGTGAGGAATTGGAGCAAA
TCATTGCTAAGGATAATGATGATGAAAATGATCAGATATTGTCAGGAAGTGATCTCCAATCTTCATGCTTCCCTAATCTGTGGCGACTTGAGATCAGAGG
ATGCAACAAGTTGAAGAGTCTCTTCCCAGTAGCCATGGCTTCAGGTCTCAAAAAGCTCCGAATACTTAGAGTAAGAAAATCCTCTCAATTATTGGGAGTA
TTTGGACAGGATGATCATGCTTCACCTGCCAATATTGAGAAGGAGATGGTGCTCCCTGATCTGCAGGAGTTGTTGCTTGTACAATTACCAAGTATTTCCT
CCTTAAGTCTCGGATGTTCTAATTTCTTGTTCCCTCATTTGAAGAAGTTGGAGGTGGATGGATGCCCGAAGCTGACCACAAAATCTGCTACTACATCAAA
TGACTCAATGATTGCTCAATCAAAGGCGTTTATGAATTTGAAAGAAATATCTATTGGAAACTTGGAAGGAGTACAAGATTTAATGCAAGTTGGACGTTTG
GTAACTAATAGAAGAGGTGGGCATGAACTTTCACTCGTGAGTTTGAAAACATTATGCTTGAACTTATTGCCAGACTTGAGGTGTATTTGGAAGGGTCTCG
TGCCGAGCAATTTGACTACTTTGAAGGTGAAAAAGTGTGACAGACTGATACATGTATTCACAATCAACATCATTGCTAGTCTAGTCCAACTTCAAGTTCT
AAAGATATCAAATTGTGAGGAATTGGAGCAAATCATTGCTAAGGATAATGACGATGAAAATGATCAGATATTGTCAGGAAGTGATCTCCAATCTTCATGC
TTCCCTAATCTGTGGCGACTTGAGATCAGAGGATGCAACAAGTTGAAGAGTCTCTTCCCAGTAGCCATGGCTTCAGGTCTCAAAAAGCTCCGAATACTTA
GAGTAAGAAAATCCTCTCAATTATTGGGAGTATTTGGACAGGATGATCATGCTTCACCTGTCAATGTTGAGAAGGAGATGGTGCTCCCTGATCTGCAGGA
GTTGTTGCTTGTACAATTACCAAGCATTGTCTACTTCAGTCATGGATGTTATGATTTCATATTCCCTCGTTTGTGGAGGTTGGAGGTGCGTCAATGTCCA
AAGCTAACCACAATATTTGGTACTACAGCAAATGGTTCAATGAGTGCTCAATCAGAGGTATCTCAAGTAGCTGAGGGTTCCAGCACTGGTTGCTCCGTGC
CAACCAGCACTGCTAGAAGTTGGACCCGAAGAAATGGGTGGAAAGAGGAAAAAGAGGAAGAGGATGGAGTCAGATGA
AA sequence
>Potri.001G444500.3 pacid=42792588 polypeptide=Potri.001G444500.3.p locus=Potri.001G444500 ID=Potri.001G444500.3.v4.1 annot-version=v4.1
MAIESVGGSVVSKIAELLVEPAIRQFRYMFCFNNFVQEFNEHKKNLALTLDRLQNDVRDAERNAEEIYKYVSKWLEDANNEIEGVNPLENEIEKNGKCFT
WCPNWTRQFKLSKALAKKTETLRKLEENGRKFPKVSYKPPLQGIEFLPSEEVTPSESSKAAFEQIMKALKDDNVNMIGLYGMGGVGKTTLVKEVGRRAKE
SQLFDEVVMATLSQNPKVTGIQDQMADSLGLKFDENSEGGRAGRLWQRLQGKKMLIVLDDVWKDIDFQEIGIPFGDDHRGCKILLTTRLQDICSYMECQP
QVFLNILTENEAWALFKIHAGLRDEDSDLNRVAKDVARECQGLPIALVAVGKALKDKSEHEWEVASEELKKSQSRHVENFDDRRNAYACLKLSYDYLKHE
KTKLCFLLCCLFPEDYNIPIEELTRCAVGYGYQDVKSIEGARKRVYMEIENLKACCMLLGTETEEYVKMHDLVRDVAIQIASSEKYGFMVEAGFGLKEWP
MRNKSFEGCKVISLMGNKLTDLPEGLVCPQLKVLLLELDRGLNVPERFFEGMKAIEVLSLKGGCLSLQSLQFSTNLQSLLLRWCECKDLIWLRKLQRLEI
LGFIWCGSVEELPNEIGELKELRLLDVTGCGLLRRIPVNLIGRLKKLEELLIGATSFNRWDVVGCDSAEGMNASLTELSSLSHLAVLSLKIPKVECIPRD
FVFPRLLKYDIVLGDGYSEGVYPTKLYLGNISTASLNAKTFEQLFPTVSLIDFRNIEGLENIVESQKDFFQRLEHVEVTGCGDIRTLFPAKWRQALKKLR
SVEIKRCDSLEEVFELDEEKELLSSLTTLRLSDLPELKCIWKGPTRHVSLHSLVHLKLLCLDKLTFIFTPSLAQSLIHMETLEIGFCRGLKRLIREKDDE
GEIIPESLGFPKLKKLYIFVCDKLEYVFPVSVSPSLQNLEEMKIVFADNLKQVFYSGEGDDIIVKSKIKDGIIDFPQLRKLSLSKCSFFGPKDFAAQLPS
LQELTIYGHEEGGNLLAQLRGFTSLETLTLSYVLVPDLRCIWKDLMPSHLTSLTVYSCKRLTRVFTHSMIASLVQLQVLEISNCEELEQIIAKDNDDEND
QILSGSDLQSSCFPNLWRLEIRGCNKLKSLFPVAMASGLKKLRILRVRKSSQLLGVFGQDDHASPANIEKEMVLPDLQELLLVQLPSISSFSLGCSNFLF
PHLKKLEVDGCPKLTTKSATTSNDSMSAQSKAFMNLKEISIGNLEGVQDLMQVGRLVTNRRGGHELSLVSLETLCLNLLPDLRCIWKGLVPSNLTTLKVK
ECKRLTHVFTDSMIASLIQLQVLEISNCEELEQIIAKDNDDENDQILSGSDLQSSCFPNLWRLEIRGCNKLKSLFPVAMASGLKKLRILRVRKSSQLLGV
FGQDDHASPANIEKEMVLPDLQELLLVQLPSISSLSLGCSNFLFPHLKKLEVDGCPKLTTKSATTSNDSMIAQSKAFMNLKEISIGNLEGVQDLMQVGRL
VTNRRGGHELSLVSLKTLCLNLLPDLRCIWKGLVPSNLTTLKVKKCDRLIHVFTINIIASLVQLQVLKISNCEELEQIIAKDNDDENDQILSGSDLQSSC
FPNLWRLEIRGCNKLKSLFPVAMASGLKKLRILRVRKSSQLLGVFGQDDHASPVNVEKEMVLPDLQELLLVQLPSIVYFSHGCYDFIFPRLWRLEVRQCP
KLTTIFGTTANGSMSAQSEVSQVAEGSSTGCSVPTSTARSWTRRNGWKEEKEEEDGVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27190 NB-ARC domain-containing disea... Potri.001G444500 0 1
AT2G28070 ABCG3 ATP-binding cassette G3, ABC-2... Potri.004G214000 1.41 0.7738
AT5G19440 NAD(P)-binding Rossmann-fold s... Potri.009G057600 6.63 0.7493 CCRL2,CCR.9
AT3G08840 D-alanine--D-alanine ligase fa... Potri.006G106000 10.81 0.7224
AT4G29920 Double Clp-N motif-containing ... Potri.006G073800 13.49 0.7678
AT4G27190 NB-ARC domain-containing disea... Potri.001G446650 16.73 0.7015
AT3G26935 DHHC-type zinc finger family p... Potri.001G070100 18.89 0.7555
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.004G147000 22.97 0.7034
AT1G23170 Protein of unknown function DU... Potri.017G124300 23.74 0.6532
AT3G05675 BTB/POZ domain-containing prot... Potri.006G202900 28.00 0.6477
AT5G02440 unknown protein Potri.001G238900 29.66 0.7075

Potri.001G444500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.