Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 281 / 4e-80 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 265 / 7e-75 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 260 / 4e-73 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 221 / 9e-60 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 212 / 7e-57 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61300 210 / 1e-56 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43740 209 / 4e-56 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12220 209 / 8e-56 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43730 208 / 9e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61190 209 / 2e-55 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G444050 [exp] 1509 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 1468 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 1460 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 1448 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 1442 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1423 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1420 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443700 [exp] 1382 / 0 AT4G27190 227 / 2e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1374 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 127 / 2e-29 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 124 / 2e-28 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 123 / 3e-28 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 123 / 4e-28 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 118 / 1e-26 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 115 / 1e-25 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10020016 [exp] 110 / 2e-24 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 110 / 3e-24 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 110 / 3e-24 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 108 / 8e-24 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G446016.1 pacid=42791571 polypeptide=Potri.001G446016.1.p locus=Potri.001G446016 ID=Potri.001G446016.1.v4.1 annot-version=v4.1 ATGGCTATCGAGATTGTTGGATCCATTGTATCTAAAATAGCAGAACTCTTGGTGGAACCAGCGATAAGGCAGTTCCGTTACATGTTCTGTTTCAACAATT TTGTTCAAGAATTCGATGAACAAATGATGAACCTGGCTTTGGCATTTTATCGTCTGCAAGATGCTGTCCACGTTGCTGAAAGGAATGCTGAAGAAATTGA GATTGATGTCAACACATGGCTGGAAGACGCAAAAAACGAAATTGAAGGTGTGAAACGTTTGCAAAATGAAAAAGGAAAAATTGGCAAATGCTTTACTTGG TGTCCAAATTCGATGCGACAATTCAAGTTAAGCAAGGCACTGGCAAAGAAGACGGAGACTTCGAGAAAACATGAAGAAAAAAGCAGAAAGTTTCCAAAAG TGTCCCACAAAGCACCCCTTCAAGAGATAAAATTTCTTCCATCAAAGGAATTCACACTCTCAGGATCGTCAGAAGAAGCTTCCAAACAGATTATGAAAGC TCTCAAAGATGACAAGGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTGGTGAAAGAAGTAGGCAGGAAAGCCAAAGAGTTG CACCTTTTTGATGAAGTTTTGATAGCTACGGTGTCCCAGAATCCAAATGTCACAGGCATCCAGGATCGAATGGCAGATAGTTTAGATCTGAAATTTGACA AGAAGAGTAAAGAAGGGAGAGCAAATGAATTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAGTCCTGGATGATGTTTGGAAAGATATTGACTTCCA AGAGATAGGGATCCCATTTGGTGATGCTCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTGAAAAGATATGCTCTTCTATGGATTGCCAGGAAAAA GTGTTTTTAGGAGTCCTATCTGAAAATGAAGCATGGGCTTTATTCAAAATCAATGCAGGTTTACGCGATGAGGACTCTGACTTGAACAGAGTGGCAAAGG TGGTTGCGAGAGAATGCCAAGGCTTGCCTTTAGCACTAGTGACAGTGGGAAGGGCTCTAAGAGATGAATCTGCAGTTAAGTGGAAAAAAGTATCTAAACA GCTAAAAAACTCTCAATTTCCGGACATGGAACAAATTGACGACCGAAAAAATGCATATGCATGTCTTAAATTGAGCTATGATTATTTGAAGTCCAAAGAA ACCAAGTCATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACGACATTCCAATCGAGGACTTGACGAGATATGCAGTTGGCTACGGGTTGCATCAAG ATGCGGAGTCCATTGAAGATGCAAGGGAACAAGTTTATGAGGCAATCAAAGACCTCAAATCTTGTTGTATGCTGTTGGGCACAGAAACTGAAGAACATGT GAAAATGCATGACTTGGTTCGTGATGTTGCTATTTGGATAGCATCATCAGAAGAATATGGATTCATGGTAAAGGCAGGCAATGGGTTGAAGGAGGGGCCA ATGAGTAATAAAAGCTTTGAAGGTTGTACAACAATGTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGAATTGGTGTGTCCACAGCTCAAAGTTC TTTTATTAGAACTGGATGACGATTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGCAATTGAAGTTTTGTCTCTAAAGGGAGGGTGTTTGTCATT GCAATCACTTCAATTCTCAACGAACCTTCAATCGTTGCTATTGATCGAGTGTGAATGCAAGGACCTCAATTGGTTGAGAAAGCTGCAAAGACTTAAGATT CTTGGTTTCATGTGGTGCGACTCCATTGAAGAATTACCTGATGAAATTGGGGACCTCAAGGAGTTAAGGTTGTTGGATGTTACAGGTTGTGTATTGCTAA GAAGGATTCCTGTGAATTTGATTGCAAGGTTGAAGAAGTTAGAAGAACTGTTGATCGGGAATTTCAGCTTCGTGGAATGGGATGTTGTTGGATGTGACAG CACAGAAGGAATGAATGCAAGCCTAACAGAACTAAATTCGCTGTCTCATTTAGCTGTATTATCATTGAAGATACCGAAGGTTGAATGCATTCCCAGAGAT TTTGTTTTTCCCAGGTTGCTCAAATATGATATAGTGTTAGGGAATGAGTTTACAGAAACAGAATACCCAACCTCGACAAGATTATATTTGGGTGGTATAA GCGCCACATCCTTAAATGCAAAGACATGTGAGCAGTTGTTTCCTACTGTGTCTCAAATTGGTTTTAGCAACGTTGAGGGTTTAGAAAATATAGTATTGTC CTCTGATCAGATGACCACCCATGGCAATGGGTCGCAAAAGGACTTCTTTCAAAGATTAGAACATGTAGAAGTGAGAGAATGTGGGGATATTCGCACTCTG TTTCCAGCAAAATGGAGGCAAGCTTTGAAAAATCTAAGGAGTGTGGAAATTGATTACTGCGAATCATTGAAAGAGGTATTTGAATTGGGTGAGGCCGATG AAGGAATTAACGAGGAGAAGGAGCTGCCGCTGCTGTCATCTTTAACGGAGTTACAGCTTTCCAGGTTACCTGAGCTCAAATGTATATGGAAGGGGCCCAC CAGACATGTCAGCCTCCAAAGTCTTATTCATCTGAAGTTGAAGTCTCTTGACAAACTGACATTTATCTTCACACCGTCCCTTGCTCAAAGTCTTATTCAT CTGGAAACACTACGGATAGGAGAATGTCGTGAATTGAAGCGTCTTATCAGAGAAAAGGATAATGATGATGAAAATAATCAGATATTGTCAGGGAGTGATC TCCAATCTTCATGCTTCCCTAATTTATGTCGACTTGAGATCAGTAGATGCAATAAGTTGAAGAGTCTCTTCCCAGTAGCCATGGCTTCAGGTCTCAAAAA GCTCCAAGTACTTGAAGTAAAAGAATCCTCTCAATTATTGGAAGTATTTGGGCAGGATGATCATCATCAACCTTCCATTCCTTTCTCTCTTTGCTAG
AA sequence Show only first row Show all	>Potri.001G446016.1 pacid=42791571 polypeptide=Potri.001G446016.1.p locus=Potri.001G446016 ID=Potri.001G446016.1.v4.1 annot-version=v4.1 MAIEIVGSIVSKIAELLVEPAIRQFRYMFCFNNFVQEFDEQMMNLALAFYRLQDAVHVAERNAEEIEIDVNTWLEDAKNEIEGVKRLQNEKGKIGKCFTW CPNSMRQFKLSKALAKKTETSRKHEEKSRKFPKVSHKAPLQEIKFLPSKEFTLSGSSEEASKQIMKALKDDKVNMIGLYGMGGVGKTTLVKEVGRKAKEL HLFDEVLIATVSQNPNVTGIQDRMADSLDLKFDKKSKEGRANELWQRLQGKKMLIVLDDVWKDIDFQEIGIPFGDAHRGCKILLTTRLEKICSSMDCQEK VFLGVLSENEAWALFKINAGLRDEDSDLNRVAKVVARECQGLPLALVTVGRALRDESAVKWKKVSKQLKNSQFPDMEQIDDRKNAYACLKLSYDYLKSKE TKSCFLLCCLFPEDYDIPIEDLTRYAVGYGLHQDAESIEDAREQVYEAIKDLKSCCMLLGTETEEHVKMHDLVRDVAIWIASSEEYGFMVKAGNGLKEGP MSNKSFEGCTTMSLMGNKLAELPEELVCPQLKVLLLELDDDLNVPERFFEGMKAIEVLSLKGGCLSLQSLQFSTNLQSLLLIECECKDLNWLRKLQRLKI LGFMWCDSIEELPDEIGDLKELRLLDVTGCVLLRRIPVNLIARLKKLEELLIGNFSFVEWDVVGCDSTEGMNASLTELNSLSHLAVLSLKIPKVECIPRD FVFPRLLKYDIVLGNEFTETEYPTSTRLYLGGISATSLNAKTCEQLFPTVSQIGFSNVEGLENIVLSSDQMTTHGNGSQKDFFQRLEHVEVRECGDIRTL FPAKWRQALKNLRSVEIDYCESLKEVFELGEADEGINEEKELPLLSSLTELQLSRLPELKCIWKGPTRHVSLQSLIHLKLKSLDKLTFIFTPSLAQSLIH LETLRIGECRELKRLIREKDNDDENNQILSGSDLQSSCFPNLCRLEISRCNKLKSLFPVAMASGLKKLQVLEVKESSQLLEVFGQDDHHQPSIPFSLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446016 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	1.00	0.9529
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	1.41	0.9478
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	1.73	0.9378
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	4.00	0.9285
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	5.29	0.8685
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	8.71	0.8808
AT5G36930			Disease resistance protein (TI...		Potri.019G018396 [exp]	9.38	0.8988
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	9.48	0.9247
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	12.48	0.8467
AT4G27220			NB-ARC domain-containing disea...		Potri.001G443400 [exp]	13.19	0.8418

Compare expression of checked genes

Potri.001G446016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.