Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15940 406 / 2e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G04070 390 / 2e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 92 / 1e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 91 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 90 / 4e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 87 / 6e-19 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G27760 86 / 2e-18 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 85 / 3e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G53090 78 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 77 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083900 [exp] 91 / 2e-20 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 87 / 4e-19 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 86 / 2e-18 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 86 / 2e-18 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G128800 [exp] 82 / 3e-17 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G028900 [exp] 81 / 1e-16 AT4G27760 553 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G086900 [exp] 79 / 3e-16 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G182000 [exp] 78 / 7e-16 AT4G27760 432 / 1e-151 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 77 / 2e-15 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022466 [exp] 405 / 1e-138 AT5G15940 400 / 1e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016771 [exp] 226 / 2e-69 AT5G15940 202 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028534 [exp] 89 / 2e-19 AT4G27760 530 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 78 / 5e-16 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003204 [exp] 78 / 6e-16 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014975 [exp] 78 / 9e-16 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10025321 [exp] 76 / 2e-15 AT5G02540 412 / 1e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009112 [exp] 76 / 7e-15 AT4G27760 510 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 75 / 1e-14 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038857 [exp] 74 / 2e-14 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G453500.1 pacid=42789402 polypeptide=Potri.001G453500.1.p locus=Potri.001G453500 ID=Potri.001G453500.1.v4.1 annot-version=v4.1 ATGAGGGAAGTGAAGAAGGCTTTGAGTTTCATCTTGACAGTAGAATTTTGGAGGATGGGAATCTTTTGGACACTCTCTCTTGTCATGTCTTACTTCCAGT TGTTCTGGCAAAGGGTTTTTACTAAAAAGCCTAATGCTTATCCTCGTTGCCCGCCGCAAAGAATTGGGACTAAGAAACCCATTTGCGTGATTACTGGTGC TACGTCTGGTATTGGTGCGGCGGCAGCTTATGATCTTTCAAAGGAGGGGTTTTATGTTGTTCTTGTTGGAAGGTCATCCCAATTGCTATCTAAGATGATA GAATGGATACACAAAAAGAATAAGGATGCCTGTGTAGAAGCTTTTGAGGTTGACCTATCATCTTTCCAGTCAATCTTGAAGTTTAAAGACTCACTTGAGA AGTGGCTATTAGATTCAGATATGCATGTTTCTGTCCAACTCTTGATAAACAATGCTGGGATACTGGCAGCTTCACATCGTCTCACAGAAGAAGGCTATGA TCAGATGATGGGTACAAATTACATTGGTGCCTTCTCTTTGACCAAACTTCTCCTACCGCTTCTCAAAAACAGTCCTATTGGCTCACGGATAGTAAATGTC ACCTCCTTTACACATCGAAATCTATTTAATGTACAGATTGACAAAGAAACTGTTGTTGGGAAGTGCCTCTCTAGATCAAAACAGTATCCATTTTCTCATA TCTACGAGTTCTCCAAGTTATGTCTCCTGATGTTCTCATATGAGCTTCACCGGCAACTTCACTCGACAGATGAATCTTGCAAAGTCTCTGTTATTGCAGC CGATCCTGGAGCAGTGGAAACCAATATCATGCGAGAACTCCCTTCTTATATTTCCCGTATGACATTTATAGCGCTCAACCTTCTGGGCCTTTTGCAGTCA CCTGAAGAGGGGGCTAGCTCTGTTATTGATGCTGCTCTTGCTCCACCAGAAATATCTGGAGTGTACTTTTTTGGTGGAAAGGGCAGGACTCTGAACTCTT CCGCACTATCACACAATATCAGACTTGCAGAGAAGCTTTGGAGATCTTCAAGCGACCTCTTTTTAGAGTCAAAACTCGCTTCTGCTAGAACATACACTTC ATGA
AA sequence Show only first row Show all	>Potri.001G453500.1 pacid=42789402 polypeptide=Potri.001G453500.1.p locus=Potri.001G453500 ID=Potri.001G453500.1.v4.1 annot-version=v4.1 MREVKKALSFILTVEFWRMGIFWTLSLVMSYFQLFWQRVFTKKPNAYPRCPPQRIGTKKPICVITGATSGIGAAAAYDLSKEGFYVVLVGRSSQLLSKMI EWIHKKNKDACVEAFEVDLSSFQSILKFKDSLEKWLLDSDMHVSVQLLINNAGILAASHRLTEEGYDQMMGTNYIGAFSLTKLLLPLLKNSPIGSRIVNV TSFTHRNLFNVQIDKETVVGKCLSRSKQYPFSHIYEFSKLCLLMFSYELHRQLHSTDESCKVSVIAADPGAVETNIMRELPSYISRMTFIALNLLGLLQS PEEGASSVIDAALAPPEISGVYFFGGKGRTLNSSALSHNIRLAEKLWRSSSDLFLESKLASARTYTS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Potri.013G111300 [exp]	1.00	0.8316
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	8.00	0.7618
AT5G63520			unknown protein		Potri.015G098700 [exp]	9.32	0.7645
					Potri.007G026200 [exp]	9.53	0.7391
AT2G32640			Lycopene beta/epsilon cyclase ...		Potri.014G156800 [exp]	9.94	0.7496
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	16.30	0.7362
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	18.97	0.7598
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	22.04	0.7537
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Potri.004G130000 [exp]	23.81	0.6709
AT5G10320			unknown protein		Potri.005G073600 [exp]	26.98	0.6742

Compare expression of checked genes

Potri.001G453500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.