Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 619 / 0 Cupredoxin superfamily protein (.1) AT5G21105 523 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 509 / 1e-175 Plant L-ascorbate oxidase (.1) AT5G03260 228 / 2e-67 LAC11 laccase 11 (.1) AT5G05390 227 / 1e-66 LAC12 laccase 12 (.1) AT5G58910 226 / 1e-66 LAC16 laccase 16 (.1) AT2G38080 223 / 2e-65 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G30210 221 / 2e-64 LAC3 laccase 3 (.1) AT5G01040 220 / 4e-64 LAC8 laccase 8 (.1) AT2G40370 218 / 3e-63 LAC5 laccase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079400 [exp] 656 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 654 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.010G171700 [exp] 645 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 638 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G219300 [exp] 528 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G159700 [exp] 523 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.007G088290 [exp] 269 / 1e-86 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.016G112000 [exp] 245 / 1e-73 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 238 / 7e-71 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009603 [exp] 661 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 659 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 627 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 617 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10026753 [exp] 526 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10025538 [exp] 527 / 6e-177 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026512 [exp] 236 / 4e-70 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10028263 [exp] 232 / 1e-68 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10040697 [exp] 232 / 1e-68 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 231 / 1e-68 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.001G454700.1 pacid=42789593 polypeptide=Potri.001G454700.1.p locus=Potri.001G454700 ID=Potri.001G454700.1.v4.1 annot-version=v4.1 ATGGCTAGGCTCTCACACAGCATAGCGATTCTTACTAAGTTGCAGGTTTCATGCATCTTCATTTTATTAACAACTGTAATTCCAAATGTGGAGGCTAGAA CCCACAATCTCACATGGAAGGTGACGTACGAGTACAAGTATCTTGACTGCTTCAAGAAGCTAGCTATTGCCATTAATGGACAGACTCCTGGACCTCATAT AAATGCAACAAGAGGCGATACCATTATCGTTACTGTTCTTAACAATTTGTTGATGGAAAATGTTGCCATCCACTGGCACGGAATCCGGCAGCTTGGTAAT GGATGGAATGATGGAACGGATTCAGTCAATCAATGTGCAGCAATGCCAGGGGGGTACTTCACATACCAATTTGTTGTTGACCAGGCAGGCACCTACATGT ACCATTCGCATTATGGAATGCAAAAATCATCTGGGCTCTATGGACTAATTACTGTAAATCCTCTCCTTGGAGAAGAAACGCCCTACCACTACGAAGATCG GGAAATTATCCTTAGTGATTGGTACCATGACTCTGCTTATGAACATGCCGTTAAATTGTCTTCAAAACCATATGTCTGGATTGGAGAGCCTCAGTCCCTT CTGATTAATGGAAGAGGGAGGTACCAGTGTGAGCTTCTCGGTGTCTCGAACCGTGATCGATGTAATGGCAGCAGTCCAGAATGTACTCCAGATGTGGTGA AAGTAAAGCCTGAGCAAACCTATCGATTTAGGATTGCTTCTTTGACTTCCCTCTCGGCTCTTAGTTTCCAAATAGAGGGTCATAAAATGACTGTTGTTGA GACTGATGGGGTGCATGTGGTTCCGTTTGTTACTGATAACTTGTACATTTACTCTGGTGAGACATACTCCGTCTTGGTCACTACCGATCAAAATCATTCG AGGAATTATGGGATTAGCATAAATGTGATTGCTCGAAAGCCTGAAACTCCGAATGGATTTGCCATTTTAAACTATGAACCTAATCCCCTCGATGCTCAGC ACCTACCACAGCCACCACCTGGACCTCTTTGGAACGATACAGATTCGCAAAGAAACCAAAGTCTTGCCATAAAAGGTCTCCGGGGTTATGTTCCGGCTCC GCCGAAGACAGCAGATAAAGTACTTCACCTTTTGAACACGCAGAACACCGTCAATGGCTACAAAGTTTGGGCAGTAAATAATGTCTCACATGCTCTCCCA GATACACCTTACCTTGTTGCACTCAAGTTAAATATACCAGATGTTTTTGATCCAACCCCAGCCCCAGAAGACTACGACCATAGCTATAATATCTATGAGA TTCCTGAAAACACAAATGCTACAACTAGCACATCCATTTACAGGTTGCCATTCAATAAAACAGTGGATATTATACTGCAGAATGCAAAAGGTATGGGAGG TGATAGTGAGACACATCCTTGGCATCTCCATGGACATAATTTTTGGGTCTTAGGATTTGGGAAGGGTAAGTTCAATCCATCAACGGCTTCCTTGAACCTG GAAAACCCAATCATGAAGAACACAGTGCCACTTTTTCCTTATGGATGGACTGCCTTGAGGTTTCGAACTGATAATCCAGGAATATGGCTTTTCCATTGCC ATATTGAGGCTCATTTCTACTTAGGCATGTTAGTGTTGTTTGAGTCAGGATCAGATATGGTTACAAAGCCACCACAGCAAAATATGGGCTGTGGAAAAAC CAAAAACTACATCAACCCTTAA
AA sequence Show only first row Show all	>Potri.001G454700.1 pacid=42789593 polypeptide=Potri.001G454700.1.p locus=Potri.001G454700 ID=Potri.001G454700.1.v4.1 annot-version=v4.1 MARLSHSIAILTKLQVSCIFILLTTVIPNVEARTHNLTWKVTYEYKYLDCFKKLAIAINGQTPGPHINATRGDTIIVTVLNNLLMENVAIHWHGIRQLGN GWNDGTDSVNQCAAMPGGYFTYQFVVDQAGTYMYHSHYGMQKSSGLYGLITVNPLLGEETPYHYEDREIILSDWYHDSAYEHAVKLSSKPYVWIGEPQSL LINGRGRYQCELLGVSNRDRCNGSSPECTPDVVKVKPEQTYRFRIASLTSLSALSFQIEGHKMTVVETDGVHVVPFVTDNLYIYSGETYSVLVTTDQNHS RNYGISINVIARKPETPNGFAILNYEPNPLDAQHLPQPPPGPLWNDTDSQRNQSLAIKGLRGYVPAPPKTADKVLHLLNTQNTVNGYKVWAVNNVSHALP DTPYLVALKLNIPDVFDPTPAPEDYDHSYNIYEIPENTNATTSTSIYRLPFNKTVDIILQNAKGMGGDSETHPWHLHGHNFWVLGFGKGKFNPSTASLNL ENPIMKNTVPLFPYGWTALRFRTDNPGIWLFHCHIEAHFYLGMLVLFESGSDMVTKPPQQNMGCGKTKNYINP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39830			Cupredoxin superfamily protein...		Potri.001G454700 [exp]	0	1
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.002G189300 [exp]	2.00	0.9959
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	2.82	0.9964
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232400 [exp]	4.47	0.9959
					Potri.001G285750 [exp]	12.56	0.9810
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	13.41	0.9940
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G097900 [exp]	14.07	0.9953
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	14.96	0.9952
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	16.00	0.9951	Pt-RD22.1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	17.60	0.9936
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G165200 [exp]	17.66	0.9932

Compare expression of checked genes

Potri.001G454700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.