Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 570 / 0 AAP7 amino acid permease 7 (.1.2) AT1G77380 516 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 510 / 7e-179 AAP2 amino acid permease 2 (.1) AT5G63850 504 / 4e-177 AAP4 amino acid permease 4 (.1) AT1G10010 495 / 2e-173 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 493 / 1e-172 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G44100 493 / 2e-172 AAP5 amino acid permease 5 (.1) AT5G49630 473 / 1e-164 AAP6 amino acid permease 6 (.1) AT5G40780 167 / 1e-46 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 164 / 2e-45 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167000 [exp] 854 / 0 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 684 / 0 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 665 / 0 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.011G167532 [exp] 524 / 0 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.005G068900 [exp] 523 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 517 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 515 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 514 / 2e-180 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079700 [exp] 509 / 1e-178 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010580 [exp] 676 / 0 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10027130 [exp] 596 / 0 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10029707 [exp] 510 / 7e-179 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 500 / 2e-175 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 500 / 3e-175 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 499 / 8e-175 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 498 / 7e-174 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 491 / 7e-172 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10018852 [exp] 491 / 1e-171 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 470 / 3e-163 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.001G470000.2 pacid=42791316 polypeptide=Potri.001G470000.2.p locus=Potri.001G470000 ID=Potri.001G470000.2.v4.1 annot-version=v4.1 ATGGGTGATGCAGCAGAAGAGTTGCCATTACTTGGAAGCTTTTCTTCTGCTTCAGCTGATGATGAACAAGAAGAGTCTCTAAAAAGAACTGGAACCATAT GGACTGCAACAGCACATGTTATAACAGGAGTGATTGGGGCAGGAGTACTGTCACTTGCATGGAGCATTGCTCAACTAGGGTGGATTGCAGGTCCTCTATG CATGATAGTTTTTGCAGTCATCACCCTTGTTTCAACAAGCCTTCTATGTGACTGCTATAGATTTCCTGATCCTGAACATGGCCCCACCAGAAACAGGTCC TACATGGAAGCTGTGAAGTTGTATTTGGGAGAGAGAAGCCAAATAGTGTGTGGAATATTTGCAGAGGAAAGCTTATATGGGTGTGGAATTGCCTATACCA TTACTTCTGCTAGTAGCATAAGAGCAATTCAAAGATCAAATTGTTACCATAGAGAAGGGCATAAAGCTTCATGTGAATATGGTGATACCATCTACATGTT GCTATTCGGAGCTGTTCAGATAGTAATGTCACAGATACCAGATTTTCATAACATGGGGTGGCTCTCTGTAATTGCAGCAATCATGTCCTTTACCTACTCT TTTATCGGATTTGGACTTGGTGTTGCAAAAGTAATAGAAAATGGGAGGATTAAGGGGAGCATTACTGGAGTCTCAGCTGCCACTACTGTCAATAAGTTAT GGCTAGCCTTCGAAGCACTAGGGGACATTGCTTTTGCCTATCCATACTCGATCATTCTGCTTGAGATACAGGATACTTTGAAGTCACCTCCACCAGAGAA CAAGACCATGAAGAAGGCCTCGATGATTTCAATATTTATCACAACTTTCTTTTACCTATGTTGTGGATGCTTTGGATATGCAGCCTTCGGCAATGATACA CCTGGAAATCTCTTGACAGGGTTTGGGTTCTTCGAGCCCTATTGGCTCATCGATTTGGCAAATGCTTGCGTTGTTCTTCATTTGGTAGGAGGATATCAGA TATATAGTCAGCCTGTGTTTGCATTTATTGAAAGCTGGTTCAGTAGGAAATTTCCAAGTAGTGGTTTTGTGAATAACTTTCACACCTTCAAACTTCCATT ATTTCCTCCTCTTCATATCAATCTTTTCCGGCTATGTTTCCGAACTGCATATGTTGCGTCAACCACTGCCATTGCAATGGTCTTCCCATACTTCAACCAA GTTTTGGGAGTGCTAGGAGCCCTGAACTTTTGGCCTCTGGCTATATATTTTCCCGTGGAAATGTACTTCGTGCAGAAGAAAATAGGTGCTTGGACAAGAA AATGGATTGTTCTTAGAACATTTAGCTTTTTTTGCTTGCTTGTAACAATAGTGGGCTTAATTGGGTCAATTGAGGGAATTATAAGTGCTAAACTTGGCTG A
AA sequence Show only first row Show all	>Potri.001G470000.2 pacid=42791316 polypeptide=Potri.001G470000.2.p locus=Potri.001G470000 ID=Potri.001G470000.2.v4.1 annot-version=v4.1 MGDAAEELPLLGSFSSASADDEQEESLKRTGTIWTATAHVITGVIGAGVLSLAWSIAQLGWIAGPLCMIVFAVITLVSTSLLCDCYRFPDPEHGPTRNRS YMEAVKLYLGERSQIVCGIFAEESLYGCGIAYTITSASSIRAIQRSNCYHREGHKASCEYGDTIYMLLFGAVQIVMSQIPDFHNMGWLSVIAAIMSFTYS FIGFGLGVAKVIENGRIKGSITGVSAATTVNKLWLAFEALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKKASMISIFITTFFYLCCGCFGYAAFGNDT PGNLLTGFGFFEPYWLIDLANACVVLHLVGGYQIYSQPVFAFIESWFSRKFPSSGFVNNFHTFKLPLFPPLHINLFRLCFRTAYVASTTAIAMVFPYFNQ VLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFFCLLVTIVGLIGSIEGIISAKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.001G470000 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.010G150400 [exp]	2.00	0.9597	Pt-GAS1.2
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.013G074000 [exp]	2.44	0.9646
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	3.87	0.9592	ZOG1.17
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	8.94	0.9169
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	10.39	0.9435	Pt-ATNAC3.1
AT1G02660			alpha/beta-Hydrolases superfam...		Potri.002G197900 [exp]	10.95	0.9063
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	12.44	0.9507
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G100801 [exp]	13.07	0.9378
AT5G53730			Late embryogenesis abundant (L...		Potri.012G006000 [exp]	13.49	0.9319
					Potri.015G106725 [exp]	15.00	0.9275

Compare expression of checked genes

Potri.001G470000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.