Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09220 544 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 542 / 0 AAP4 amino acid permease 4 (.1) AT1G77380 539 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G58360 536 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 534 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 520 / 0 AAP7 amino acid permease 7 (.1.2) AT5G49630 511 / 1e-179 AAP6 amino acid permease 6 (.1) AT1G44100 508 / 2e-178 AAP5 amino acid permease 5 (.1) AT5G40780 158 / 2e-43 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 155 / 4e-42 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167200 [exp] 829 / 0 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470000 [exp] 686 / 0 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 668 / 0 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.007G100100 [exp] 548 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 546 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 542 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 540 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 538 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G112100 [exp] 528 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010580 [exp] 607 / 0 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10029707 [exp] 541 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10027130 [exp] 539 / 0 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10029703 [exp] 525 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037150 [exp] 517 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 516 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 516 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 512 / 3e-180 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 511 / 3e-179 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 501 / 1e-175 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.001G470200.6 pacid=42788950 polypeptide=Potri.001G470200.6.p locus=Potri.001G470200 ID=Potri.001G470200.6.v4.1 annot-version=v4.1 ATGGCAGTCAAACATGAGCTAGAGAATAGTTTGTTGCTTGATGATGATGGGCGGACAAGAAGAACCGGAACCTTATGGAGTTGCATAGCTCATATAATTA CGGCTGTCATCGGCTCTGGTGTTCTGTCTTTGGCTTGGAGTGTAGCACAGCTAGGATGGATAGCAGGTCCAGTTGCCATGCTTTGCTTTGCTATTGTCAC CTATGTTTCTGTTGTGCTTCTTTCTGATTGCTACAGATATCCTGACCCTGTCACTGGAACACGAAACTACTCTTACATGGATGCTGTTAGAGTGAATCTT GGTAAAACCCAGACATGCCTTTGCGGATTGTTTCAATATCTGTTCATGTATGGGATTTGCACTGCATATGTCATTACCACTTCGACTAGTATGAGCGCAA TTCGACGATCAAACTGTTACCATGAAAAAGGTCACAATGCACCTTGTGAATACGTGTATACTCCGTATATGCTGATATTCGGAGCTGTTCAGATTGTAAC ATCGCAGATACCAGATTTCCACAGCATAGAATGGCTTTCAGTTCTTGCTGCAATCATGTCTTTTGCCTACTCTCTTATAGGATTTGGACTTGGCTTGGCT ACAGTAATAGAAAATGGGATGATCAAGGGAAGCATTACGGGTGCCCCAGCTGCTACTAGAGCTAAAAAACTATGGTTAGTCTTTGAAGCTCTTGGGGACA TTGCTTACGCCTATCCATACGCACTAATTCTTTTTGAAATTCAGGATACTTTGAAGTCACCTCCACCTGAGAACAAGACCATGAAGAAGGCATCGATGAT TGCACTCTTCTTGACAACATTATTTTACCTCTTATGTGGATGCTTTGGATACGCAGCTTTTGGCAACAGTACTCCTGGAAATCTTTTGACAGGACTTGGA TTTTATGAGCCTTACTGGCTCATTGACTTTGCTAATGCTTGCATTGTTCTACATTTGGTTGGAGGCTATCAGCTCTTCAGTCAGCCAGTATTCACGTTTG TAGAACGTTGGTCCTCGAAGAAGTTCCCAAACAGTGGATTTCTGAATAACTTCTACAGCATCAAACTCCCACTGTTGCCTTCTTTTCACATTAATATTTT CAGGATATGTTTTCGAACAGCATATGTTGTGTCAACTACCGTGATTGCCACTGTTTTCCCTTACTTCAACCAAGTTCTGGGGCTATTAGGGGCCTTAAAC TTTTGGCCATTAGCCATATATTTCCCAGTAGAAATGTATTTTGTACAGAACAAAATAGAGGCTTGGACAAGAAAATGGATTGTTCTCAGAACATTTAGCT TTGTTTGCTTTCTTGTATCAATTGTAGGCTTGATTGGGTCAATTGAAGGAATTGTAAGTGCTAAATCTATTTAG
AA sequence Show only first row Show all	>Potri.001G470200.6 pacid=42788950 polypeptide=Potri.001G470200.6.p locus=Potri.001G470200 ID=Potri.001G470200.6.v4.1 annot-version=v4.1 MAVKHELENSLLLDDDGRTRRTGTLWSCIAHIITAVIGSGVLSLAWSVAQLGWIAGPVAMLCFAIVTYVSVVLLSDCYRYPDPVTGTRNYSYMDAVRVNL GKTQTCLCGLFQYLFMYGICTAYVITTSTSMSAIRRSNCYHEKGHNAPCEYVYTPYMLIFGAVQIVTSQIPDFHSIEWLSVLAAIMSFAYSLIGFGLGLA TVIENGMIKGSITGAPAATRAKKLWLVFEALGDIAYAYPYALILFEIQDTLKSPPPENKTMKKASMIALFLTTLFYLLCGCFGYAAFGNSTPGNLLTGLG FYEPYWLIDFANACIVLHLVGGYQLFSQPVFTFVERWSSKKFPNSGFLNNFYSIKLPLLPSFHINIFRICFRTAYVVSTTVIATVFPYFNQVLGLLGALN FWPLAIYFPVEMYFVQNKIEAWTRKWIVLRTFSFVCFLVSIVGLIGSIEGIVSAKSI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.001G470200 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	11.61	0.9186	CYP716B4
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	15.00	0.9173
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	18.27	0.9183
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	24.59	0.9114
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	25.63	0.9063
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	27.36	0.9102
					Potri.001G076300 [exp]	30.19	0.8294
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	33.34	0.9074
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G003000 [exp]	34.08	0.8420
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	35.15	0.9030

Compare expression of checked genes

Potri.001G470200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.