Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56110 333 / 4e-114 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G21440 204 / 2e-63 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 202 / 6e-63 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 201 / 7e-63 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 202 / 4e-62 MYB ATMYB93 myb domain protein 93 (.1) AT5G16770 200 / 9e-62 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G28470 197 / 5e-61 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT5G15310 195 / 4e-60 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G17785 195 / 2e-59 MYB ATMYB39 myb domain protein 39 (.1) AT3G02940 193 / 2e-59 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167600 [exp] 586 / 0 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.017G075000 [exp] 213 / 3e-66 AT3G28470 254 / 2e-82 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.004G033100 [exp] 208 / 2e-64 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 206 / 9e-64 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 206 / 1e-63 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.012G072500 [exp] 204 / 6e-63 AT3G28470 228 / 3e-72 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.015G067700 [exp] 204 / 6e-63 AT3G28470 222 / 6e-70 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.001G408700 [exp] 201 / 3e-62 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G096800 [exp] 200 / 7e-62 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008353 [exp] 343 / 3e-118 AT5G56110 224 / 4e-72 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Lus10027110 [exp] 339 / 6e-117 AT5G56110 224 / 4e-72 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Lus10005834 [exp] 208 / 7e-65 AT3G28470 283 / 2e-94 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10039462 [exp] 207 / 1e-64 AT3G28470 284 / 9e-95 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10018418 [exp] 204 / 2e-63 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10041142 [exp] 201 / 2e-62 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10002593 [exp] 201 / 3e-62 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036472 [exp] 200 / 4e-62 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10039743 [exp] 196 / 1e-61 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036660 [exp] 200 / 2e-61 AT3G28470 213 / 2e-66 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G470500.1 pacid=42791121 polypeptide=Potri.001G470500.1.p locus=Potri.001G470500 ID=Potri.001G470500.1.v4.1 annot-version=v4.1 ATGGGCAGGATTCCATGCTGTGAGAAGGACAACGTGAAAAGGGGACAGTGGACACCTGAAGAAGATAACAAACTCTCTTCTTACATCGCCCAACACGGCA CCCGTAACTGGCGGCTCATCCCCAAGAATGCTGGTCTTCAAAGATGCGGGAAGAGTTGCAGGCTGCGGTGGACAAATTATCTTCGTCCTGATCTGAAGCA TGGCCAGTTTTCGGATGCGGAAGAGCAGACCATTGTCAAGCTCCACTCTGTTGTTGGCAACCGATGGTCATTGATTGCTGCTCAGCTTACAGGACGCACA GACAATGATGTTAAAAATCACTGGAACACCAAGCTGAAAAAGAAGCTTTCTGGCATGGGTATAGATCCAGTTACCCACAAACCCTTCTCCCATCTCATGG CAGAGATTGCCACCACACTAGCAACACCACAAGTGACCCACCTAGCAGAAGCAGCCCTTGGCTGCTTCAAAGATGAAATGCTCCAACTCCTCACTAAAAA GCGGATCGACTTCCAGCTGCAACACTGCAACACAAATGTAGCACAAGGGAACACCTCATCCCCTTGTATTTCCACTAAACATGATGAAAATGATGATACC ATTGAGAAAATCAAGCTTGGTTTATCAAGAGCTATGCAAGAACCTGGAATGTTGCCTCCAAACAAAATCTGGGACTCCACTGGTGTTACTTCTCCCAATT TGGCAGGCACCTGCTGTGATTTTCCTTCATCGGTTAATGCATTTTTATGCTGTCCATCTTCTTTCGGCAACGAAGGAGCTTTGTCACTGTGGAATCAGAG CATGTGCACTGGAAGCACATGCACAACAGGTGACCAACAAGGTAGGTTGCATGAAATGCTTGACAATGAAAACGGAGAAGAATTCGAGGGTGGGAAAGAG ATTAGAAAAGTCTCATCCATATTCAATACAGACTGCGTGCTATGGGATATGCCATCTGATGATCTAATGAACCCAATTATTTAA
AA sequence Show only first row Show all	>Potri.001G470500.1 pacid=42791121 polypeptide=Potri.001G470500.1.p locus=Potri.001G470500 ID=Potri.001G470500.1.v4.1 annot-version=v4.1 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVVGNRWSLIAAQLTGRT DNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLATPQVTHLAEAALGCFKDEMLQLLTKKRIDFQLQHCNTNVAQGNTSSPCISTKHDENDDT IEKIKLGLSRAMQEPGMLPPNKIWDSTGVTSPNLAGTCCDFPSSVNAFLCCPSSFGNEGALSLWNQSMCTGSTCTTGDQQGRLHEMLDNENGEEFEGGKE IRKVSSIFNTDCVLWDMPSDDLMNPII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Potri.001G470500 [exp]	0	1
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	9.79	0.7741
AT1G54290			Translation initiation factor ...		Potri.001G418600 [exp]	15.09	0.6956
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	15.29	0.7625
AT1G04590		EMB2748	unknown protein		Potri.016G102800 [exp]	16.24	0.7564
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	17.02	0.7775
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	17.66	0.7803
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050700 [exp]	18.00	0.7191	Pt-NRAMP3.2
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	21.97	0.7829
					Potri.009G144550 [exp]	26.45	0.7213
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.001G050900 [exp]	33.25	0.7357

Compare expression of checked genes

Potri.001G470500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.