Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56220 1306 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G23440 598 / 0 Disease resistance protein (TIR-NBS class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129600 [exp] 612 / 0 AT4G23440 1332 / 0.0 Disease resistance protein (TIR-NBS class) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032275 [exp] 579 / 0 AT4G23440 1274 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10024639 [exp] 428 / 1e-138 AT4G23440 831 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10024640 [exp] 172 / 2e-46 AT4G23440 424 / 2e-140 Disease resistance protein (TIR-NBS class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G472200.4 pacid=42792955 polypeptide=Potri.001G472200.4.p locus=Potri.001G472200 ID=Potri.001G472200.4.v4.1 annot-version=v4.1 ATGGCCATGGATGAAGAAGGATCGCTTGCTGGTAAACTTCCTCAAGAACCCCCTAGTGGCCTCACCATCAAGATTTCTACTTCTGGCAGCAAAATTGGTA AGAACATCTTAACTCCCCTTGGTTGTTCAAATTCAGATTCAACTTCTCCAAACTTGAAAAACTCAATTGAATCATCCCCATGTAACTCTCCACTAGTGTC ACCACCTTCATCAGCCTTTGTTTCAGCCTTACAGTCACCATACATATCACCAAGGGCTATAACCCCAAAACCCCAAGAGAACCCAGCCCCACCTGAGAAC CCAACACCAGTCTCCCACTCCTCACCACCATTCTCATCATACCGTGGTTCACAATCAGATGACATACCAAGCAGCTCTTACACTCCCCCATCAGACCAAT ATGAATATTCTGATGACCCCACAGAGGCCAAGCTCAAGTATGTTACCTGTGTTCCGGTCCCAGATCCTGCTCCTCCTAGAATCTCATTCTCTTTTCCAGT CCCACGCATTTCCTTCAAAGGGCCTGTTTCTCCAGCTTCCAATGCCAAACTCAGGAGCTGTGATGTTTACATTGGCTACCATGGTCAGAATCCTAATCTT ATGCGCTTCTGTAAGTGGCTTAAATCAGAGCTAGAGCTTCAGGGAATTGTTTGCTTTGTTGCGGATAGAGCCAAGTACTCGAATACTCAGAGCCATGAGA TTGCTGACAGAGTTATCTGTTCTGTGACTTATGGAGTTGTGGTTGTGACTAACTCTAGCATCCTCAATCATCCCAGCTTGGAGGAGATTAGATTCTTTGC TCAAAAGAAGAACTTGGTTCCAATTTTCTTCAACACCGGCCTTGCTGAGATCACAGGTCTTCTCAACTGCAACTCAATTGACAAAGAGTGTAGAGAAGTG ATTGACGGACTAGTGAAGTCTAATGAGTTGAAGCTGGAGGTCAATGAGGGTAATGGGAGGAGCTGTGTAGCTAAAGCTGCTGGGATATTAAGAGCAAAGC TCGGGCGAAAGAGTGTGGCCGAGAAAGCTGCAGAAGGATTTGAGGAGATTCCATTTCCAAGGAACAAATGTTTTGTAGGACGAGAGAAGGAGATTATGGA GATTGAAACTGCATTATTTGGATGTACTGATAGTTCTGAACAGGATTATGCTGTGCCGATCATTAAAGGAGAAACCAGTGGGCAATCTGAGGGCCTTGCA GATGAAGAAAGTGATACTTTTAGCAGCAGCCGAGGAGGGAGATTTATTAATTTGGAATTGGGAGGGAAGTGCAAAGAACCGACATTGGAGGCTTGGGTGG AACCAGTTACGGGAAGGAATTCATTGAAGAGATCAAAGTACAAGAAATCGAAAAGTGGGAATTACAAGACCCTGGATAGCAGTGTGTTTTGCATAAATGG CGTTACAGGCATTGGAAAGACAGAGCTTGCACTTGAATTTGCTTATAGATATTCTCAGAGGTACAAAATGGTCTTGTGGGTTGGCGGGGAAGCTAGATAT TTCAGGCAGAACTTACTGAATCTATCACAGAATTTGGGGTTGGATGTGAGTGCTGATGCCGAGAAGGAAAGAGGAAGGATTCGAAGCTTTAAAGAGCAAG AAAATGAAGCATTTGAGAGAGTCAAAAGGGAATTGTTTCGAGACATGCCATATCTGCTCATTATTGACAACCTTGAGACAGAAAGAGAATGGTGGGAAGG GAAGGATCTGCATGATTTGATTCCAAGGAACACTGGAGGGACACATGTGATCATCACAACAAGACTATCCAAGACGATGAACTTTGACATAATGCAGCTG CCACCGTTGGAATTGACTGATGCAATGGTCTTAATGAGAGGAAAAAGGAGAAGAGATTATCCAACTGAGGAACTTCAATTTCTCCATAAATTTGATGAGA AATTGGGAAGGTCGAACTTTGGCCTGTGGTTGGTTGGGTCACTTCTTTCTGAGCTTGCAATTTCTCCATGTGCACTTTTTGAAGCTGTGAACCAAGTTCC GCTTGAAGATGGTTCTACTTACTCCTACATGAGCATGAGTGATGAGCATTACTGTAAGAGCAATCCTTTCCTAATGAAACTTCTCCATTTCAGTTTCATT ATCTTGCAGCAAACCGATGGAAGAAAAAACCTTCTTGCCTTAAGAATGCTTCTTGTTGGTGCTTGGTTTGCCCCAGCTCCCATTTCAGCAACTTTGCTGG CCACTGCTGCTAAGAATATGCCCGCAATTGGAAATGGATTCAGAAAATGGACCAAATGCGTGAGCCTCGCATTTTCTTGCTGCTCTGGGTGTGGATTAGC ACCCCAAAGCGAAGAAGATGCAGCCACTCTTCTTGTTAAACTAGGCTTAGCACGAAGAGTCAACAGACAGCCAGGTTGTTGGATTCAATTCCACCCAATA ACTCAAGTTTTTGCAAGAAGAAAAGAAGGTTTATCCGCAGCCAAGGCTACAGTCCAGGGAGTGAGGAAAGTTGGCAATCCATCCATCAACACAAACCATC TATGGGCATCTGCATTCCTTGTCTTCGGATTCAAATCCGAGCCTCCGCTTGTTCAACTGAAGGCTATTGATATGGTTTTGTACATAAAGAAGACAGCTGT GCCGCTAGCAATTAGAGCCTTCACAACGTTCTCAATATGTAATTCAGCATTGGAGCTTTTAAAGGTGTGCACTAATGTGCTTGAAGAAGTAGAGAAGTCA TTTGTATCGCAAATACAGGACTGGTGTCATGGTTCACTTTGTTGGAAAAGGAACATTCATGGTCATCAAAGGGTAGATGAATATTTGTGGCAAGATGTGA CATTGTTGAAGGCTAGCTTGCTTGAGACTAGAGCAAAGTTGCTGCTTAGAGGTGGTCATTTTGATGGTGGTGAAGAGCTGTGCAGGACTTGTATAAGCAT CCGGACAGTGATGCTTGGTCACGATCATGCTCAAACATTGGCTGCCCAGGAAACACTAGCAAAGTTGGTTAGAATGAGAAGCAAAGTATGA
AA sequence Show only first row Show all	>Potri.001G472200.4 pacid=42792955 polypeptide=Potri.001G472200.4.p locus=Potri.001G472200 ID=Potri.001G472200.4.v4.1 annot-version=v4.1 MAMDEEGSLAGKLPQEPPSGLTIKISTSGSKIGKNILTPLGCSNSDSTSPNLKNSIESSPCNSPLVSPPSSAFVSALQSPYISPRAITPKPQENPAPPEN PTPVSHSSPPFSSYRGSQSDDIPSSSYTPPSDQYEYSDDPTEAKLKYVTCVPVPDPAPPRISFSFPVPRISFKGPVSPASNAKLRSCDVYIGYHGQNPNL MRFCKWLKSELELQGIVCFVADRAKYSNTQSHEIADRVICSVTYGVVVVTNSSILNHPSLEEIRFFAQKKNLVPIFFNTGLAEITGLLNCNSIDKECREV IDGLVKSNELKLEVNEGNGRSCVAKAAGILRAKLGRKSVAEKAAEGFEEIPFPRNKCFVGREKEIMEIETALFGCTDSSEQDYAVPIIKGETSGQSEGLA DEESDTFSSSRGGRFINLELGGKCKEPTLEAWVEPVTGRNSLKRSKYKKSKSGNYKTLDSSVFCINGVTGIGKTELALEFAYRYSQRYKMVLWVGGEARY FRQNLLNLSQNLGLDVSADAEKERGRIRSFKEQENEAFERVKRELFRDMPYLLIIDNLETEREWWEGKDLHDLIPRNTGGTHVIITTRLSKTMNFDIMQL PPLELTDAMVLMRGKRRRDYPTEELQFLHKFDEKLGRSNFGLWLVGSLLSELAISPCALFEAVNQVPLEDGSTYSYMSMSDEHYCKSNPFLMKLLHFSFI ILQQTDGRKNLLALRMLLVGAWFAPAPISATLLATAAKNMPAIGNGFRKWTKCVSLAFSCCSGCGLAPQSEEDAATLLVKLGLARRVNRQPGCWIQFHPI TQVFARRKEGLSAAKATVQGVRKVGNPSINTNHLWASAFLVFGFKSEPPLVQLKAIDMVLYIKKTAVPLAIRAFTTFSICNSALELLKVCTNVLEEVEKS FVSQIQDWCHGSLCWKRNIHGHQRVDEYLWQDVTLLKASLLETRAKLLLRGGHFDGGEELCRTCISIRTVMLGHDHAQTLAAQETLAKLVRMRSKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56220			P-loop containing nucleoside t...		Potri.001G472200 [exp]	0	1
AT2G23770			protein kinase family protein ...		Potri.005G128501 [exp]	2.23	0.9240
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	3.00	0.9563
					Potri.007G113700 [exp]	3.16	0.9398
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.005G211800 [exp]	4.58	0.9389
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.013G161100 [exp]	4.89	0.9381
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G072600 [exp]	7.74	0.9226
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	9.94	0.9169
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.010G097700 [exp]	10.39	0.9167	PSKR.1
					Potri.017G047400 [exp]	10.81	0.9147
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.017G144001 [exp]	12.16	0.8480

Compare expression of checked genes

Potri.001G472200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.