Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	(),CHB903,Pt-SWI3.1,of
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33610 436 / 1e-149 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G21700 162 / 9e-43 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G47620 142 / 1e-36 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G34430 86 / 3e-17 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT3G07740 51 / 2e-06 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100400 [exp] 148 / 2e-38 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.005G180800 [exp] 144 / 2e-36 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.004G153300 [exp] 130 / 5e-32 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 129 / 1e-31 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 88 / 4e-18 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.014G166300 [exp] 43 / 0.0005 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016043 [exp] 458 / 4e-158 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 457 / 3e-155 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 155 / 2e-41 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 154 / 1e-40 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10026334 [exp] 124 / 6e-30 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 104 / 2e-23 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 92 / 2e-19 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10023583 [exp] 84 / 9e-17 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 84 / 1e-16 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10042734 [exp] 72 / 5e-13 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF04433 [poplar] [flax] SWIRM SWIRM domain CL0123 [poplar] [flax] PF16495 [poplar] [flax] SWIRM-assoc_1 SWIRM-associated region 1
Representative CDS sequence Show only first row Show all	>Potri.002G004800.1 pacid=42777819 polypeptide=Potri.002G004800.1.p locus=Potri.002G004800 ID=Potri.002G004800.1.v4.1 annot-version=v4.1 ATGGCCTCAGTATCACCCGCACCACCATCTCTCCACCCCAAAATCCCTCTATCCTCTACCGTCAAACCTGAGATTCAACCTCCCACAACCGCCGCACCTT CTCCCCGACCACCACAACCACCTCCTCCCTCCTCCGAACCCGACGTCGTCCACATCCCTAGCTACTCCCGCTGGTTTTCATGGGACAACATACACGAATG CGAGGTCCGATTCCTCCCAGAATTCTTCGATTCGCGATCGCCTTCGAAAAACCCTAGTGTTTACAAGTACTACAGGAACTCAATCATCTCCCAATTCAGG AAAAACCCTTCCGCCAAACTCACTTTTACTGAAATCAGGAAGACTCTCGTAGGCGATGTGGGGTCCATTCGTAGGGTTTTTGATTTCTTGGATGCTTGGG GTTTGATCAATTACTCCCCTTTGAATAAGCAATTGAAGTGGGAAGATGGCAAGGATTCTTCTTCCAAGACTGCTGCTTCGCCCGCCGGTGGTGGTGGTGG TGATGGAGGGACTGCCGGTGATGCTAATGCTAGTAATACTAAGGACAATTGTAAGAGATTGTGCAGTGGTTGTAAGTCTCTCTGTAGCATTGCTTGCTTC TTTTGCGATAAGTATGATATAACTCTTTGTGCCCGGTGCTATGTGCGTGGAAACTATCGGGTTGGTGTCAGTTCATCGGATTTCAGGCGGGTGGAGATAA GTGAAGAGGCAAGGACAGATTGGACAGAGAAAGAGACTTTGCAACTTCTTGAAGCTGTTATGCATTATAGGGATGACTGGAAGAAGGTTGCGCAACATGT TGGTGGTAGAAGTGAGAAGGACTGCATTACTCATTTTATCAAGCTTCCTTTTGGAGAGGTTTTTACTGATTATACAGACGTAGGGGATGTTGACAGCAAG TATAACCAAATAAAGGACTGTGATGATGATGAATCTGGACGAAATGGTAATGGTTCTCCATCCACAAGTAAAAAAATACGTCTCTCACCTCTTGTGGATG CAAGCAACCCAATAATGGCTCAGGCTGCTTTTTTATCAGCTTTGGCGGGCACAGAGGTTGCAGAAGCTGCGGCTCGAGCAGCTGTAACTACTCTGACTGA GGTGGAATATGGAGGAAGTAAAGGCAGTCTTGAATTTGTTTCCAGGGTTACAAAACACCTAGATTCTGGTGTTGCATCAAATGGTGACACCAATCTAAGC GCTTCAGTAAAAGCTTGTTTGGATGCGAATTCACTTCTGGAGAAGGAAGAGTCGGATGTGGAGAGAGCAATTTCCAGGATTACAGAAGTTCAGATGAAAG AGATTCAAGATAAGATTCTTCGGTTTGAGGAGTTGGATTTGCAGATGGAGAAAGAGTGGCAGCAGCTGGACCAAATGAAGAACCTTCTCTTTGCTGACCA GCTCAGCGTTTTATCTAAAAGAAGTGTAACAACAAAAATCGACGAACGTGGTTCAACACTGAAAGCAGAGGAACGAGGGGATGAAAATGCAAAAACTGAT TGA
AA sequence Show only first row Show all	>Potri.002G004800.1 pacid=42777819 polypeptide=Potri.002G004800.1.p locus=Potri.002G004800 ID=Potri.002G004800.1.v4.1 annot-version=v4.1 MASVSPAPPSLHPKIPLSSTVKPEIQPPTTAAPSPRPPQPPPPSSEPDVVHIPSYSRWFSWDNIHECEVRFLPEFFDSRSPSKNPSVYKYYRNSIISQFR KNPSAKLTFTEIRKTLVGDVGSIRRVFDFLDAWGLINYSPLNKQLKWEDGKDSSSKTAASPAGGGGGDGGTAGDANASNTKDNCKRLCSGCKSLCSIACF FCDKYDITLCARCYVRGNYRVGVSSSDFRRVEISEEARTDWTEKETLQLLEAVMHYRDDWKKVAQHVGGRSEKDCITHFIKLPFGEVFTDYTDVGDVDSK YNQIKDCDDDESGRNGNGSPSTSKKIRLSPLVDASNPIMAQAAFLSALAGTEVAEAAARAAVTTLTEVEYGGSKGSLEFVSRVTKHLDSGVASNGDTNLS ASVKACLDANSLLEKEESDVERAISRITEVQMKEIQDKILRFEELDLQMEKEWQQLDQMKNLLFADQLSVLSKRSVTTKIDERGSTLKAEERGDENAKTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Potri.002G004800 [exp]	0	1	(),CHB903,Pt-SWI3.1,of
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	2.64	0.7675
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G215200 [exp]	15.87	0.6544	RSZ33.2
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	22.97	0.6389
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	26.32	0.6026
AT1G24310			unknown protein		Potri.010G059100 [exp]	28.28	0.5785
AT5G08415			Radical SAM superfamily protei...		Potri.013G136000 [exp]	30.98	0.5964
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.017G058100 [exp]	35.36	0.5314
AT3G12010			unknown protein		Potri.006G195000 [exp]	53.40	0.5369
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	53.98	0.5734
AT5G67020			unknown protein		Potri.005G138300 [exp]	72.66	0.5383

Compare expression of checked genes

Potri.002G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.