Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03780 94 / 1e-20 TRFL10 TRF-like 10 (.1) AT1G01150 81 / 1e-16 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G12670 72 / 2e-13 Homeodomain-like superfamily protein (.1) AT1G17520 46 / 3e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G14770 46 / 4e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G72740 45 / 5e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 43 / 0.0003 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G68030 42 / 0.0009 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053300 [exp] 77 / 9e-15 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 72 / 3e-13 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G154500 [exp] 49 / 8e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G147400 [exp] 41 / 0.0009 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042361 [exp] 63 / 1e-11 AT1G01150 63 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10026308 [exp] 66 / 2e-11 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10012209 [exp] 62 / 7e-10 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015562 [exp] 61 / 2e-09 AT1G14770 66 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10011320 [exp] 59 / 4e-09 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10024200 [exp] 52 / 6e-07 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10020771 [exp] 51 / 1e-06 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10042209 [exp] 46 / 4e-05 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10013809 [exp] 44 / 6e-05 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10007348 [exp] 45 / 0.0001 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G005600.2 pacid=42779999 polypeptide=Potri.002G005600.2.p locus=Potri.002G005600 ID=Potri.002G005600.2.v4.1 annot-version=v4.1 ATGAGAAGTAAATACGGCGGCGGGCAGCGGCGCATTTCAAAATCACCTCAGAAACCTCCCTCATCCTCCACTCTACGCCCATTTCCTCAATTGAGTCCGG ATGAAGCTAATAGTGATGAAGGCGATGCTAATTTAAGTGAAAAATCAAGCAGAAGCGATGATGATGTGGGTAACGGTGGTGATTGGATGGAGGTAGATGC ATGTTTAAGCTGTAATAAGCGTGGGAAATCGAAATTGTTGGTTTGTTGTGTGATTGGCTGTCCAGTTTCTATTCATGAAAAGTGTGCAAATTTTAAGCTT GCTTTTGATGACTCGGGTAGGTTTTGTTGCCCTTACTGTTCTTATAAACGGGAGGTTGGTAGGGCTAAAGAGCTTTTTCGGAAGGCTATGTTGGCGAAGA AGGCGTTGTTGGGTTTTATAGATCCTGAAATGGTGGGTGGTGAGGCTAAGCGAAATGGGGGGGAAAGAGCGGAATTTGATGGTGCTGAAAATAGAGATGC GCTGGTGGAGGATGGTCTCAAGGTAAGTGATTGTGATCGTTGTGAAGTGATGGTTGATGATGAAATGGATGGTGCTTTGCCTGGTGCTGTTGACGGTAGT GACAATGGACATAAGAGTCAAGAGGAGAAAATACAGGGGATTGAGTCACTTGAGGATTCAATCAGCAATGAAATTAGGGATGAGAGAAATATATCTGAAA CTCATGAGTTTGAGACCTTAGAAGGTGAGGAAGGGAAGCAAGAACGGGAAAAGGATGGCAGAATTCTTGAGGGTGGAGAGCGAGCAGAATCTTCAAAGGA TCATTATGTAGAGAAAGAACAAAAACAGATGCAGCAGGATGGATGTGATGACGAAGAACAAAAAGAACAAGAAGAAAAGCATCAGGATGGATGTGATGAC AAAGAACAAGGTCAATGTGTGGGAGAAGAACAAGTGCATCATGATGCACGAGAAGCCAATTCTGGTGGAGGAGTTGCTGCACCTAAGGCTCCTCATGTTT CTGATTCGGACACTGGGAAATCTGTTGTGCTTCGGAGGCGTGTCAAGCATATTGGTAAGAAGAATATAGCAGAGTCTCTGGATGCCAAACTTTCGAAGGA AGCACCCCCTCAACCACACACCATTGATGAAAAGGAAGCTAAAATCCAAAAAAAGAAAGTTATCCTCTCCAAAGAGCCCAGACAACGCCTGGAATCTCCT AAGATATCCTCCAACCTTTATCCTCGTAATGAAAAGCGTCAAAGGTTGAATTGGACAGCTGATGAGGAAGACACACTAAAGGAAGGAGTGGAGAAATTTG CTATACCAGGAAACAAAAATACTCCATGGAGAAAAATTTTGGAGTTTGGTCATCGTGTTTTTGATTCAACTCGAACTCCCACTGATCTCAAGGATAAGTG GAGGAATATGACAAAATAG
AA sequence Show only first row Show all	>Potri.002G005600.2 pacid=42779999 polypeptide=Potri.002G005600.2.p locus=Potri.002G005600 ID=Potri.002G005600.2.v4.1 annot-version=v4.1 MRSKYGGGQRRISKSPQKPPSSSTLRPFPQLSPDEANSDEGDANLSEKSSRSDDDVGNGGDWMEVDACLSCNKRGKSKLLVCCVIGCPVSIHEKCANFKL AFDDSGRFCCPYCSYKREVGRAKELFRKAMLAKKALLGFIDPEMVGGEAKRNGGERAEFDGAENRDALVEDGLKVSDCDRCEVMVDDEMDGALPGAVDGS DNGHKSQEEKIQGIESLEDSISNEIRDERNISETHEFETLEGEEGKQEREKDGRILEGGERAESSKDHYVEKEQKQMQQDGCDDEEQKEQEEKHQDGCDD KEQGQCVGEEQVHHDAREANSGGGVAAPKAPHVSDSDTGKSVVLRRRVKHIGKKNIAESLDAKLSKEAPPQPHTIDEKEAKIQKKKVILSKEPRQRLESP KISSNLYPRNEKRQRLNWTADEEDTLKEGVEKFAIPGNKNTPWRKILEFGHRVFDSTRTPTDLKDKWRNMTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03780		TRFL10	TRF-like 10 (.1)		Potri.002G005600 [exp]	0	1
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	4.79	0.7882
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	5.09	0.8554
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	7.54	0.7968
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.008G032800 [exp]	7.93	0.8360
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	10.90	0.7970
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	11.40	0.8197
					Potri.005G043750 [exp]	11.48	0.8285
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	11.66	0.8383	SDG904
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.004G032700 [exp]	12.00	0.7979
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	13.03	0.8273

Compare expression of checked genes

Potri.002G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.