Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 902 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 869 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 812 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 794 / 0 SKS7 SKU5 similar 7 (.1) AT4G22010 776 / 0 SKS4 SKU5 similar 4 (.1) AT4G38420 746 / 0 SKS9 SKU5 similar 9 (.1) AT4G28090 681 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 624 / 0 SKS17 SKU5 similar 17 (.1) AT1G55570 597 / 0 SKS12 SKU5 similar 12 (.1) AT3G13400 584 / 0 SKS13 SKU5 similar 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247700 [exp] 1062 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 879 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 820 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 800 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 791 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 664 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 605 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 588 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 584 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034560 [exp] 910 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 893 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 874 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 865 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 785 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 782 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 759 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 753 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10022648 [exp] 695 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10023977 [exp] 690 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G013700.1 pacid=42777389 polypeptide=Potri.002G013700.1.p locus=Potri.002G013700 ID=Potri.002G013700.1.v4.1 annot-version=v4.1 ATGCCGCTCAACTTAGCGGGAAAAACTGCAGTACTCTGCACATTTTTGTGTGTCTCAGTTTCTATTATTTCCAGTGTTAAAGCTGAAGATCCTTACAGGT TCTTCGACTGGAATGTTACTTATGGTTTCATCTACCCTCTTGGTGTTCGTCAACAGGGTATTCTCATCAATGGACAATTCCCAGGACCTGACATTCACTC TGTGACTAATGACAACCTTATTATCAATGTCTATAACAGCTTAGATGAGCCTTTCCTCCTCTCTTGGAATGGAATTCAACAGAGGAGAAACTCATTTGAG GATGGTGTCATTGGGACCACGTGCCCGATTCCTCCGGGAAAGAACTTTACATATATTCTCCAGGTCAAGGATCAGATAGGAAGTTTCTACTACTTCCCAT CTCTTGGATTCCACAAGGCTGCTGGTGGTTTTGGAGGAATCAGAATCCTCAGTCGGCCTCGAATCCCCGTTCCTTTCGATGATCCTGCTGGTGACTACAC CATTCTTATTGGAGATTGGTACCTGTCCAACCACACGGACTTGAAGGCTGTATTGGACGGGGGCAGGAAGCTACCATTCCCTGATGGAATCCTCATCAAT GGTCGTGGACGCAATGGCTATTATCTTACTGTTGAACAAGGAAAAACTTACAGGTTGAGAATATCAAATGTTGGGTTGCAAAATTCCCTTAACTTCAGGA TCCAAAACCACAAAATGAAGTTGGTCGAAGTGGAAGGAACGCACACTCTCCAAACTACCTACTCGTCTCTCGACGTTCATGTTGGCCAGTCTTATTCTGT TCTATTTACTGCTGACCAACCTGGCCAAGACTATTATATTGTGGTTACTTCACGGTTCACCTCTACAGTTCTCAACACCACTGGTATTCTACATTATAGC AACTCTGCTGGTGCAGTCTCTGGCCCATTCCCTGGTGGACCAACCATCGAAGTTGACTGGTCACTAAACCAGGCTCGCTCTATCAGGACTAATCTTACTG CAAGTGGACCAAGGCCAAATCCACAAGGCTCATACCACTATGGAATGATCAACACTACCAGAACTATCATAGTGGCAAATTCGGCTGGTCAAGTCAATGG CAATCAGAGATATGGAGTCAATAGCGTGTCCTTTATCGCACCAGACACTCCCATGAAGATTGCAGACTACTTCAAAATTCAGGGAGTTTTCAAGGAGAAC GGCATAACCGACAGACCTTATGGTGGAGGGTTGTACCTGGACACAGCAGTTTTGACCGTTCCTTATAGAGCATATGTGGAAATTGTATTCCAAAACGATG AGGACATTTTGCAGAGCTGGCATCTTGATGGGTACAGTTTCTTTGTTGTCGGCATGGATGGTGGACAGTGGACAACAGCTAGCAGGGACCAGTACAATCT TCGCGACGCAGTTGCTAGATGCACTACTCAGGTGTATCCCAAAGCATGGACTGCTATATATATTCCACTCGACAATGTGGGGATGTGGAACTTGAGGACA GAATTTTGGGCACGTCAATATCTTGGACAACAATTTTACTTGCGAGTTTATACTGATTCAACTTCACTCAGAGACGAATTCCCTATTCCAAAGAATGCAC TTCTTTGTGGTAGGGCAAGTGGTCGACGCACCCGACCTCTGTAA
AA sequence Show only first row Show all	>Potri.002G013700.1 pacid=42777389 polypeptide=Potri.002G013700.1.p locus=Potri.002G013700 ID=Potri.002G013700.1.v4.1 annot-version=v4.1 MPLNLAGKTAVLCTFLCVSVSIISSVKAEDPYRFFDWNVTYGFIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVYNSLDEPFLLSWNGIQQRRNSFE DGVIGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTILIGDWYLSNHTDLKAVLDGGRKLPFPDGILIN GRGRNGYYLTVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLFTADQPGQDYYIVVTSRFTSTVLNTTGILHYS NSAGAVSGPFPGGPTIEVDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTRTIIVANSAGQVNGNQRYGVNSVSFIAPDTPMKIADYFKIQGVFKEN GITDRPYGGGLYLDTAVLTVPYRAYVEIVFQNDEDILQSWHLDGYSFFVVGMDGGQWTTASRDQYNLRDAVARCTTQVYPKAWTAIYIPLDNVGMWNLRT EFWARQYLGQQFYLRVYTDSTSLRDEFPIPKNALLCGRASGRRTRPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G013700 [exp]	0	1
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.004G010100 [exp]	1.00	0.8544
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	5.74	0.8313
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	10.39	0.8306
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	12.96	0.7857
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	14.42	0.7822
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	16.88	0.7734
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.014G101500 [exp]	17.54	0.7624
AT1G78172			unknown protein		Potri.002G096200 [exp]	19.62	0.7868
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	19.89	0.8069
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	19.97	0.8058

Compare expression of checked genes

Potri.002G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.