Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75790 671 / 0 SKS18 SKU5 similar 18 (.1) AT1G76160 548 / 0 SKS5 SKU5 similar 5 (.1) AT1G21850 548 / 0 SKS8 SKU5 similar 8 (.1) AT4G22010 541 / 0 SKS4 SKU5 similar 4 (.1) AT5G48450 533 / 0 SKS3 SKU5 similar 3 (.1) AT1G21860 526 / 0 SKS7 SKU5 similar 7 (.1) AT4G25240 526 / 0 SKS1 SKU5 similar 1 (.1) AT1G41830 525 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G12420 525 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G51480 518 / 2e-179 SKS2 SKU5 similar 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180500 [exp] 550 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 543 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.001G120300 [exp] 540 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.003G112700 [exp] 537 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.005G247700 [exp] 536 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 533 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 533 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.014G177700 [exp] 526 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.004G010100 [exp] 525 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017262 [exp] 555 / 0 AT1G75790 518 / 0.0 SKU5 similar 18 (.1) Lus10025860 [exp] 530 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10022648 [exp] 528 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10030045 [exp] 522 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 522 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10031143 [exp] 521 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10035282 [exp] 521 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10022465 [exp] 521 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10020022 [exp] 519 / 2e-180 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10032241 [exp] 520 / 3e-180 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G021000.1 pacid=42776727 polypeptide=Potri.002G021000.1.p locus=Potri.002G021000 ID=Potri.002G021000.1.v4.1 annot-version=v4.1 ATGAGTCCTTTCAGCCTCCTTTTCTACCTCTCCTCCCTCGCTGTGTTGGTAGATGGCAAATCGCTTTCCTATGACTGGACAGTTTCCTTCTCTCACCGTG CTCCTCTTGCTCTTACCAAACAGGTGATTGTGATCAACGATCAATTTCCGGGACCATTGTTGAATGCAACAACAAATGATGTGCTAAACATCAATATTCA TAACAACTTGACAGAACCATTCCTTATGACATGGAACGGACTGCAAATGAGAAGGAATTCATGGCAAGATGGGGTGCAAGAGACTAACTGTCCAATACTA CCTGGCCGAAACTGGACTTACAGTTTTCAAGTGAAGGATCAGATCGGAAGTTTCTTTTATTTCCCATCACTTCTCCTGCACAAAGCTGCTGGTGGATATG GTCCCATTCGTGTGAATAATCGTGAGGTTATTCCTATTCCATTTCCACAACCTCATGGAGATATTGATGTCCTCATTGGAGATTGGTACAGTGCAGATCA CCGGGATTTGAGGGCTTTGCTTGATAATGGGACTGGACTTCAGAATCCCAGTGGAATTCTTATCAATGGACGGGGTCCTAATGAAACAGTTTTTGAATTT CAACCAGGGGCTACATACAGGCTAAGGATTTCAAATGTGGGCTTGAAAACTTCGTTGAACTTCAGGATTCAAGACCATCTAATGTTGTTAGTGGAGACAG AAGGGTCTTACACAGCACAACAAACGTATAGTAATCTGGACATCCATGTTGGTCAATCCTACTCAGTCTTAGTTACAGCAAAGAATCAAACTAGTGGCAA GTCCTACTACATGGTTGCAAGTTCCCGCTTAACTGACGCTGAACTTTTTGGAGTCGGCGTCATTCGCTACCCGAACTCTGATGATTTTCCATCCGGCCCA CTTCCCCCAGGACCACAGTTACATGATTATTTTTACTCCATTGAACAAGCTCGTTCAATAAGGTGGAACTTGTCAGCGGGAGCTGCTAGGCCAAACCCTC AAGGTTCATATCACTATGGCAGCATCAACGTGTCCCGTACAATAGTCCTCAGGAACGGCGAGACCGATATAAATAGACACCTGTATACGGTCAATGGGGT GTCATTTGTGAGCCAAGGTACACCATTAAAGATGGCAGACTATTTCGAGCTTGAAACGTTGAAGACTGGAATTTTTCCAGATACTCCAATTGGTAATGGT ATCTCGACATTGGATACTTCAGTTATCAATGCAAATTACAGAGAGTTTTACCATTTGGTGTTTGAAAATCCTACCCCATCTTTGCAAACATGGCACCTTG ACGGCTACAACTTCTTTGTTGTTGGCATGGAGTTTGGTACATCATCATGGGAAGAGGATATGAAGGCTACATATAACTTGAATGATGCTGTTTCTCGTTC TACAGTTCAGGTTTATCCATTCGGATGGACGGCAGTGATGGTTATGCTGGACAATCAAGGGTTGTGGAATCTGAGATCACAGGATGTGGAGAGATGGTAT CTAGGGCAAGAGTTATACTTGCGAGTCAGAGGCATTGGAGAGGAGGATCCATCAACCATTCCTGCTAGAGATGAAGTTCCACTTCCTGAAAACGCCATCT TGTGTGGAGAAATCTCTGGTTTACAGCAAACGTTATTTTAG
AA sequence Show only first row Show all	>Potri.002G021000.1 pacid=42776727 polypeptide=Potri.002G021000.1.p locus=Potri.002G021000 ID=Potri.002G021000.1.v4.1 annot-version=v4.1 MSPFSLLFYLSSLAVLVDGKSLSYDWTVSFSHRAPLALTKQVIVINDQFPGPLLNATTNDVLNINIHNNLTEPFLMTWNGLQMRRNSWQDGVQETNCPIL PGRNWTYSFQVKDQIGSFFYFPSLLLHKAAGGYGPIRVNNREVIPIPFPQPHGDIDVLIGDWYSADHRDLRALLDNGTGLQNPSGILINGRGPNETVFEF QPGATYRLRISNVGLKTSLNFRIQDHLMLLVETEGSYTAQQTYSNLDIHVGQSYSVLVTAKNQTSGKSYYMVASSRLTDAELFGVGVIRYPNSDDFPSGP LPPGPQLHDYFYSIEQARSIRWNLSAGAARPNPQGSYHYGSINVSRTIVLRNGETDINRHLYTVNGVSFVSQGTPLKMADYFELETLKTGIFPDTPIGNG ISTLDTSVINANYREFYHLVFENPTPSLQTWHLDGYNFFVVGMEFGTSSWEEDMKATYNLNDAVSRSTVQVYPFGWTAVMVMLDNQGLWNLRSQDVERWY LGQELYLRVRGIGEEDPSTIPARDEVPLPENAILCGEISGLQQTLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75790		SKS18	SKU5 similar 18 (.1)		Potri.002G021000 [exp]	0	1
					Potri.004G099433 [exp]	3.16	0.7725
					Potri.010G053902 [exp]	4.69	0.7480
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016700 [exp]	10.90	0.6582
AT1G43760			DNAse I-like superfamily prote...		Potri.012G064001 [exp]	14.49	0.4929
AT5G25930			Protein kinase family protein ...		Potri.018G088086 [exp]	15.49	0.5552
					Potri.014G181301 [exp]	18.84	0.6752
					Potri.005G064250 [exp]	21.23	0.5987
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.013G109300 [exp]	30.65	0.6040
AT3G47800			Galactose mutarotase-like supe...		Potri.012G128800 [exp]	90.45	0.5086
AT1G42430			unknown protein		Potri.005G249700 [exp]	90.57	0.5401

Compare expression of checked genes

Potri.002G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.