Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75490 163 / 2e-50 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 144 / 1e-41 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40340 141 / 3e-40 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT2G40350 135 / 6e-40 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT3G57600 129 / 4e-36 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT5G05410 110 / 1e-28 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT2G38340 107 / 2e-28 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT2G33710 101 / 4e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G11020 100 / 1e-24 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT4G28140 96 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233300 [exp] 368 / 3e-130 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 134 / 6e-38 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 132 / 4e-37 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 117 / 1e-31 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 117 / 2e-31 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.006G104200 [exp] 102 / 5e-25 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.001G067600 [exp] 95 / 2e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.005G168700 [exp] 96 / 4e-23 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.008G210900 [exp] 94 / 4e-23 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010632 [exp] 178 / 4e-56 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 156 / 7e-47 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 150 / 4e-44 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 139 / 2e-41 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 132 / 1e-36 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 126 / 2e-34 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 124 / 3e-34 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 117 / 1e-31 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 112 / 5e-30 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 113 / 7e-30 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.002G029400.1 pacid=42779020 polypeptide=Potri.002G029400.1.p locus=Potri.002G029400 ID=Potri.002G029400.1.v4.1 annot-version=v4.1 ATGGGAGGAATGTCAAAATCAATCATGAGTGGTTTTGGAGAGAAAAAACAGTTCAAGAAGCCTGAGCAGGCTAGTTCTAGGAAAGGGTGCATGAGAGGCA AAGGAGGACCAGAGAACGCTCTCTGCACTTACAAGGGTGTACGCCAGAGAACTTGGGGCAAATGGGTGGCCGAAATTCGGGAGCCCAACCGTGGTGCTCG TCTCTGGCTTGGCACCTATGACACCTCCCATGAAGCTGCCATGGCTTACGATGCTGCTGCTCGTAAACTATATGGCCCTGAGGCAAAGCTCAACTTACCT GAGTTACAAGTTAATAGTAGCCAGTTTCCAGCCTCTCCTGCCAATTCTCAGGTGATCCAAATGACAAACCAACCCTCTCATCTCATTCAAAATTCTAGTC CTACATCTACATATTCATCAAATATCCCAAATATGGAGTCAAATGAGGCGAAACCAATATTATACAACCATAATCCAATCATGTCTTTCTCTAATGAAAG CGTTGATTCGAATGGAATGGAGGTAGAAAATGACGCAAATTTTGGGCGAAGTGGAGACGTAATCAAAGAATTCTCGGCGAATCTCAACGTGAACATGACT TTCAATGACTCAATTTGGGCAGAGGCGGCATTGTCGATAAATTTTCCAGTGATGGATGATCCCGGAATTTTTGCTAGCAATCTCATGGAAGAATCTGGTG GGGACACAATGCAGACTCCGTGGTGCATGTAA
AA sequence Show only first row Show all	>Potri.002G029400.1 pacid=42779020 polypeptide=Potri.002G029400.1.p locus=Potri.002G029400 ID=Potri.002G029400.1.v4.1 annot-version=v4.1 MGGMSKSIMSGFGEKKQFKKPEQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTYDTSHEAAMAYDAAARKLYGPEAKLNLP ELQVNSSQFPASPANSQVIQMTNQPSHLIQNSSPTSTYSSNIPNMESNEAKPILYNHNPIMSFSNESVDSNGMEVENDANFGRSGDVIKEFSANLNVNMT FNDSIWAEAALSINFPVMDDPGIFASNLMEESGGDTMQTPWCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.002G029400 [exp]	0	1
					Potri.015G076300 [exp]	3.16	0.9715
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.005G233300 [exp]	3.31	0.9541
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G103850 [exp]	4.12	0.9306
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	6.00	0.9791	Pt-INO.2
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	7.93	0.9778	Pt-CYP709.2
					Potri.001G459001 [exp]	8.00	0.9774
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.005G196850 [exp]	8.36	0.7484
					Potri.004G022300 [exp]	8.66	0.9370
AT1G04645			Plant self-incompatibility pro...		Potri.018G148366 [exp]	9.00	0.9724
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	12.40	0.9376

Compare expression of checked genes

Potri.002G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.