Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 438 / 1e-149 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 429 / 3e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 399 / 1e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 389 / 8e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 386 / 2e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 377 / 2e-126 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 362 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 330 / 6e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 312 / 4e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 309 / 3e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020900 [exp] 454 / 4e-157 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 430 / 7e-148 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 424 / 5e-145 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 421 / 4e-144 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 413 / 5e-141 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119132 [exp] 414 / 7e-141 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 409 / 2e-140 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119066 [exp] 409 / 1e-138 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.007G019600 [exp] 387 / 1e-130 AT1G43910 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024275 [exp] 556 / 0 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 538 / 0 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015802 [exp] 422 / 7e-145 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 416 / 1e-142 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 417 / 2e-142 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 361 / 3e-120 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 353 / 3e-119 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 353 / 8e-117 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 323 / 2e-105 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 318 / 1e-103 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.002G032700.1 pacid=42778190 polypeptide=Potri.002G032700.1.p locus=Potri.002G032700 ID=Potri.002G032700.1.v4.1 annot-version=v4.1 ATGTGGTTCTCGAAGGAGAGCTTGCCACGGCCACCACCTCCTCACTATGAAACTATCTTGTCGGTGGCAGCTTCTCTCACTGCCTCTGCCATTCTCTTTC GCTCTATCATAAACGAACTCTTTCCCGATTCTGTCAAGGAATATTTGTCTTCGAGCCTTCAAAAAATATCATCCCGTTTATCATCCCAGCTCACTATTGT CATTGAAGAATCTGACGGACTCGTTGCGAACCGAATGTTCAAGGCTGCTAACGTGTATTTAGGCTCAAAGTTATTGCCTTCGACGCGTAAAATCAAGGTA CATCAGCAAGAAAAGGAGGATGAACTAGAAGTTAGTGTTGATAAAAATCAGGAACTTTTTGATGTGTTTAAGGGAGTCAAGTTTAAGTGGGTTGCGGCGT CTCGTGTTGATGGGCTAGTTTCTTCTAACAAGAAACGCCAAGACAGTGCCTTTTCAAGGTCTGAGGTACGATATTTCGAGCTAGCTTGTCATAAAAAGCA CAGGGACATGGTTTTGAGTTCATATTTTCCTTATATTTTGCAAAAAGCTAAAGCAATAAAGGAAGAAAAAAAGACAGTGAAACTGCATACTATTGACTAT AATGGTCCTGATTATTGGGGTTCTATCAAGTTTGATCATCCTGCTACGTTTGATACAATAGCAATGGACCCAGAGATGAAAAGGGAATTGATTGAGGATC TAGATAGGTTTGTAGAAAGTAGGGAGTTTTATAGGAGGGTAGGCAAGGCTTGGAAACGCGGGTACTTGTTTCATGGACCACCTGGAACAGGGAAGTCAAG CTTAGTTGCAGCCATGGCTAATTATCTCAGATTTGATGTTTATGATTTGGACTTAAAAGAGGTTCAATGCAATTCAGATTTGAGGAGGTTGTTGATTGGC ACAGGCAATCGGTCAATGTTAGTGATAGAGGATATTGATCGGTCTTTCGAGTCCGTGGAAGATGATGAGGTAACTCTGTCTGGCCTTCTGAATTTTATTG ATGGCTTGTGGTCAAGTTCTGGAGATGAAAGAATATTAGTGTTCACAACAAATCACAAGGACCAGCTTGATCCAGCATTACTAAGACCAGGGCGTATGGA TGTCCACTTGCACATGTCCTATTGCACTTTCAATGGTTTCAAGACACTGGCACTTAATTATTTGCGTCTTCAAGAGCATCCCTTATTCGGAGAAATTAAG GAGCTGATAGAGAAAGTACAGGCTACACCTGCAGAAGTTGCTGGAGAGCTAATGAAAAGCGAGGATCCAGAAGTTGCACTTCAAGGACTAATCAAGTTCC TCCATGACAAGGAAACATCTGAAACTAGCAGGAATAATTGA
AA sequence Show only first row Show all	>Potri.002G032700.1 pacid=42778190 polypeptide=Potri.002G032700.1.p locus=Potri.002G032700 ID=Potri.002G032700.1.v4.1 annot-version=v4.1 MWFSKESLPRPPPPHYETILSVAASLTASAILFRSIINELFPDSVKEYLSSSLQKISSRLSSQLTIVIEESDGLVANRMFKAANVYLGSKLLPSTRKIKV HQQEKEDELEVSVDKNQELFDVFKGVKFKWVAASRVDGLVSSNKKRQDSAFSRSEVRYFELACHKKHRDMVLSSYFPYILQKAKAIKEEKKTVKLHTIDY NGPDYWGSIKFDHPATFDTIAMDPEMKRELIEDLDRFVESREFYRRVGKAWKRGYLFHGPPGTGKSSLVAAMANYLRFDVYDLDLKEVQCNSDLRRLLIG TGNRSMLVIEDIDRSFESVEDDEVTLSGLLNFIDGLWSSSGDERILVFTTNHKDQLDPALLRPGRMDVHLHMSYCTFNGFKTLALNYLRLQEHPLFGEIK ELIEKVQATPAEVAGELMKSEDPEVALQGLIKFLHDKETSETSRNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	0	1
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	1.00	0.9641
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Potri.019G108800 [exp]	6.00	0.9240
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	6.63	0.9017
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	7.34	0.8916
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	8.71	0.8888
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.015G022700 [exp]	12.00	0.9007
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.001G164700 [exp]	13.60	0.8687
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	13.85	0.9213	Pt-PM37.1
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	14.00	0.8555
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	16.00	0.8933

Compare expression of checked genes

Potri.002G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.