Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GMMYB29.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 238 / 9e-79 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 230 / 6e-75 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G06180 220 / 2e-71 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT4G21440 204 / 5e-64 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G79180 202 / 8e-64 MYB ATMYB63 myb domain protein 63 (.1) AT1G16490 201 / 8e-64 MYB ATMYB58 myb domain protein 58 (.1) AT5G16770 202 / 2e-63 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 201 / 4e-63 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 198 / 1e-62 MYB ATMYB41 myb domain protein 41 (.1) AT4G05100 197 / 1e-61 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224100 [exp] 443 / 4e-159 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 256 / 2e-85 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 223 / 4e-73 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118200 [exp] 205 / 3e-64 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 203 / 3e-63 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 203 / 3e-63 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 202 / 3e-63 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 201 / 1e-62 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 200 / 2e-62 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003557 [exp] 261 / 5e-87 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 248 / 8e-82 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10041145 [exp] 233 / 1e-76 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 218 / 1e-70 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10021871 [exp] 215 / 7e-70 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10011820 [exp] 213 / 2e-68 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10022021 [exp] 211 / 2e-68 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10042561 [exp] 204 / 5e-66 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10039743 [exp] 198 / 7e-63 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10014784 [exp] 197 / 4e-62 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G038500.1 pacid=42778973 polypeptide=Potri.002G038500.1.p locus=Potri.002G038500 ID=Potri.002G038500.1.v4.1 annot-version=v4.1 ATGGTGAGAGCTCCATGCTGTGAGAAGATGGGATTGAAGAGAGGTCCCTGGACTGCTGAAGAGGATCGGATTCTCATCAATCACATTCAACTTTATGGCC ATGGCAATTGGCGTGCACTTCCTAAACAAGCTGGTCTGCTGAGGTGTGGAAAGAGCTGCAGGCTCCGGTGGATAAATTACTTGAGGCCTGACATTAAACG AGGAAATTTCAGCAGAGAAGAAGAGGATACCATCATCAAATTGCATGAGATGTTAGGCAATAGATGGTCGGCAATTGCAGCAAGATTACCAGGACGCACA GACAACGAAATTAAAAATGTGTGGCACACCCACTTGAAAAAAAGACTTGAGCAAAACCATTTCGCCCCAGAAATCAATGGAAGATCTGTTGATGTTTCTA GATTCAATCACGAATTAAAGACTGGTCCAGAAATAGTGAGTTCATCAAACGTTGTTGCAGCAGGATGTGATCAAAGCAAGGAACATAGACCAATTTCACC ACAACAATGTTCAAGTGATGTCTCTTCGGTGACCACAGTTGATACCAGTAATGACATGTGCACGAAGGTAGCGGAGTCGGATGATTTTCTTGAAATGGAT GAGATTTTTTGGTCAGAAGTACTGTCTGCTGATAATTCAAGCATGATGAGTGATTATTCTGCCATTAGCACTGAGCCGCAACTTCAATTTCCATTTTCTC CACTGATAATTGATGTGGAACAAGTCCAAGCCACTAATTCAAATATGTATGATGGCATGGACTTTTGGCACAACCTCTTCACAAGAGCTGGGGAATTACC AGAATTAACAGAAATTTGA
AA sequence Show only first row Show all	>Potri.002G038500.1 pacid=42778973 polypeptide=Potri.002G038500.1.p locus=Potri.002G038500 ID=Potri.002G038500.1.v4.1 annot-version=v4.1 MVRAPCCEKMGLKRGPWTAEEDRILINHIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSREEEDTIIKLHEMLGNRWSAIAARLPGRT DNEIKNVWHTHLKKRLEQNHFAPEINGRSVDVSRFNHELKTGPEIVSSSNVVAAGCDQSKEHRPISPQQCSSDVSSVTTVDTSNDMCTKVAESDDFLEMD EIFWSEVLSADNSSMMSDYSAISTEPQLQFPFSPLIIDVEQVQATNSNMYDGMDFWHNLFTRAGELPELTEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G038500 [exp]	0	1	Pt-GMMYB29.2
AT2G26530		AR781	Protein of unknown function (D...		Potri.014G034900 [exp]	1.41	0.9568	AR781.2
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.001G166200 [exp]	1.73	0.9587
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193500 [exp]	2.82	0.9533
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	3.46	0.9563
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.003G081200 [exp]	4.24	0.9461
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	4.47	0.9513
AT5G35735			Auxin-responsive family protei...		Potri.002G222700 [exp]	4.47	0.9437
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.005G223100 [exp]	5.65	0.9446
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088900 [exp]	7.34	0.9442
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147000 [exp]	9.21	0.9351

Compare expression of checked genes

Potri.002G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.