Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 88 / 6e-22 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28360 84 / 1e-20 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G50640 83 / 7e-20 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 83 / 2e-19 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT3G15210 81 / 7e-19 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G12980 81 / 2e-18 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G24590 80 / 3e-18 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT5G51190 79 / 3e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13910 77 / 9e-18 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G53170 76 / 3e-17 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219600 [exp] 218 / 4e-73 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.011G056900 [exp] 89 / 1e-22 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 88 / 4e-22 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.004G047600 [exp] 82 / 2e-19 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 79 / 1e-18 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.003G077700 [exp] 81 / 2e-18 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.007G138100 [exp] 79 / 2e-18 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G356100 [exp] 79 / 2e-18 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.011G057000 [exp] 78 / 8e-18 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035329 [exp] 86 / 4e-20 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 82 / 2e-19 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035129 [exp] 81 / 9e-19 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10031526 [exp] 81 / 1e-18 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10035076 [exp] 81 / 2e-18 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10015415 [exp] 79 / 3e-18 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 79 / 3e-18 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 76 / 6e-18 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10042995 [exp] 73 / 3e-16 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10017907 [exp] 74 / 4e-16 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.002G043300.2 pacid=42777298 polypeptide=Potri.002G043300.2.p locus=Potri.002G043300 ID=Potri.002G043300.2.v4.1 annot-version=v4.1 ATGGCGGTGGACGCGTGGCGCCGCCGTAACGACACTGTCACAACAACCCTCTCCCTTGCAGGACCTCCAGCTCCCCCCACACCAGCGGTGGAGAACGAAC CTCAACGCCATTTCAGAGGCGTGAGGAAGAGGCCGTGGGGTCGATTTGCTGCTGAGATTCGGGATCCATGGAAGAAGACGCGTCGTTGGCTTGGAACTTT TGACACGGCCGAGGAAGCGGCACTTGCTTATGACGAGGCAGCTCGGTCTCTCCGTGGACCAAAGGCAAGGACGAACTTCTTCCACCGAGACCATCTTGCT CCTCTGCCGTTTTTGCAAACAACGGTGGTTGGTGCCGGTGGTTTAAAGATATGGTGCTCGCCGGTTTTTCTTTCTGATGAGGTGTCAAGAATGGCTGCGC CAACGGCGGTGGCTCCGGTGAGGTCAGAGTATCAGGGGTACAAGATCGAGAGTGTGGATGAAAACGTGGGTTTGGTTTTAAATGAAGAGAAGCAAAGGCC GCTGTTGTTTGACTTGAACTTGCCGGCACCACTCTTTTGA
AA sequence Show only first row Show all	>Potri.002G043300.2 pacid=42777298 polypeptide=Potri.002G043300.2.p locus=Potri.002G043300 ID=Potri.002G043300.2.v4.1 annot-version=v4.1 MAVDAWRRRNDTVTTTLSLAGPPAPPTPAVENEPQRHFRGVRKRPWGRFAAEIRDPWKKTRRWLGTFDTAEEAALAYDEAARSLRGPKARTNFFHRDHLA PLPFLQTTVVGAGGLKIWCSPVFLSDEVSRMAAPTAVAPVRSEYQGYKIESVDENVGLVLNEEKQRPLLFDLNLPAPLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.002G043300 [exp]	0	1
AT1G75060			unknown protein		Potri.014G041200 [exp]	8.24	0.7714
AT5G53880			unknown protein		Potri.001G398700 [exp]	8.83	0.7755
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	13.74	0.7182
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	15.36	0.7376
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	18.57	0.7529
AT5G56230		PRA1.G2	prenylated RAB acceptor 1.G2 (...		Potri.001G472300 [exp]	20.17	0.7081
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	25.09	0.7210
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	32.40	0.6948
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	32.44	0.6549
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	32.78	0.7252

Compare expression of checked genes

Potri.002G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.