Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 590 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 425 / 2e-128 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 424 / 3e-127 transmembrane receptors;ATP binding (.1.2) AT5G18360 391 / 3e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 394 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 390 / 2e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 383 / 8e-114 TAO1 target of AVRB operation1 (.1) AT1G72840 371 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G12010 372 / 1e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 362 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 1226 / 0 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 771 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 684 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 681 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 677 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 672 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G028750 [exp] 671 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 655 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 640 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 842 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 842 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 688 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 607 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 514 / 3e-162 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 481 / 5e-151 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 466 / 1e-143 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004257 [exp] 457 / 6e-140 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 444 / 3e-135 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033825 [exp] 433 / 3e-135 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.002G056100.3 pacid=42777472 polypeptide=Potri.002G056100.3.p locus=Potri.002G056100 ID=Potri.002G056100.3.v4.1 annot-version=v4.1 ATGGCTTCCAGCAACTCCAACTCCACCTCGTCAAAATGGGAATACGATGTGTTCCTGAGTTTTAGAGGTGCAGACACAAGGTCCGGTTTCACAGACCATT TATATTCTGCTTTGTCTCGGGAAGGAATCCATACATTTAGAGATGCAAATGAGATCCATATTGGTGAAGAAATTGGACCGGAGTGTCTCCAAGGAATTGA AAAGTCAAGGTTTTCTATTGTCATTCTCTCAAAGGGCTATGCATCCTCCCCTTGGTGTCTTGATGAGCTTGTGCACATCCTCAGATGTAGAAAAGAAGGC CATGGTGTTTGGCCTGTCTTTTATGACATAGATCCGTCTGATGTTGAAGAGCAAAAAGGAAGTTTTGAAGAAGCTTTTGCTGAGCATGAAAAGAGTTTCA AGGATGACATGGATAAAGTGGAGAAATGGAGGGATGCTCTAAGAGAAGTTTCTTACTTGAAGGGTCTGGATCTACGAAAACATCTAGACGGGCATGAAGC TGAAAACATAGACTACATTGTCAAGGAGATTTCAGTTATACTTGATCGGACAATCTTAAGGGTTGCTGTCCACCCAGTTGGCTTAGATTCTCGAGCAAAA GAAGTGATCTCCTTGCTAGATGATGAGTCAATAGATGTTCGCATAGTTGGTATAATTGGGATGGGGGGCATAGGCAAGACAACTCTTGCCAAGGAGGTTT ACAATTTAGTCTTCAAAAGATTTGAAGGCAGCTGCTTTCTTGAAAATGTTAGACAGCAAATTATTTCCAGTGGGATAGCCTACTTACAGAGACAGCTTCT CTCGGATATCTTGAAAAGAAAACATGAGAAGATATACAATGTTGATAGAGGATCGAAGGTGATAAAAGAAAGATTACGATGCAAGCGTGTATTCATTGTT CTGGATGACATTGAAGATAAACAGGAAGAACTGGATAAAATTCTGGGGAATCTTGATTGGCTTTACCCTGGAAGCAGGGTGATAATAACAACTAGAATTA AGAATCTGTTACAACCATCAAAATTGTATCGACAATATGAGGTCAAGGAATTGAATGGCAGCGATTCTCTTCAGCTACTAAGCTTACATGCCTTCAACAA GCGCTGTCCCAATGAAAGTTACATGGATTCTGCGAGTAGAATTGTATCCTATGCAGGAGGAAATCCACTAGCCCTTACAGTTTTGGGATCAGATTTGTGT GGCCAAAACATTGATGTATGGAATAGCAGATTAGAAAAACTAAAAGTGATTAGCCACAAAGGGACTCACAGTATACTTAAAATAAGTTATGATTCTCTTG ATGTTGCTGAGAAGTCTATATTTCTGGATATTGCATGTTTCTTCATTGGGTACAAAAAGGATTATGTCATGAGCATACTTGATGGCTGTGGTTTCTTTCC AATTGATGGAATCAATACTCTCACGAGGAGATGCCTTGTAAAGGTTGGCGCTAACAATAAGTTCTTGATGCATGATTTGCTTCGAGACATGGGAAGAGAA ATTGTTCTCCAAGAATCTTTTATGGATCCTGGGAAACGTAGCAGATTATGGCATAAAGAAGATGTTATTGAACTGTTAACTGACAGAACGGGTACAAAAG CAGTTGAAGGCCTTGTTCTAAGCCTGCAAGGATCAAAACGATTCAATACCAAGGCATTCAAAAAGATGAAAAGGCTAAGACTACTCCAACTCAATTTCGT TTGCCTTGAAGGAAACTACGAATATATTTCTAACAAATTAAGGTGGTTGTGTTGGTCTGAGTTCCCCTTGAAAGCTATCCCAGATGATCTTACTCTGGAA CATTTGATTGTTCTTGATATGCGCTATAGCAGTCTACAGCAATTTTCAGAGGAATTAAAGTCTTTGAAAAAGCTGAAATTCCTTTACCTTAGCCACTCCC ATAAGCTCATCGAGACTCCTAACTTTGAAGGCTTTCCCAGTCTTGAAAAATTAAAACTTAAAGATTGCATTAGTTTGGTAAAGGTTCATGACTCCATTGG ACTTCTCAGTCATCTTCAGTTCCTGAATCTGCAAGATTGCGTGGATCTTAAGAATCTCCCGGGAAGCATCTGTGCTCTAAGCTCACTTAAGAAGTTAAAT GTGTCAGGCTGCTCAAAATTAGAGGAATTGCCAGAGCACTTGGGGAGTTTGCAATCTTTGGTTCTGCTCCTTGCTGATGAAACTGCAATAAGTACGCTAC CAGAAACCATTGGAGATCTAAAGAATCTGGAAAAATTATCCCTGCATGGTTGTCGTCTTATCTTCTCGCCAAGGAAATGTCCACCAACAAGACGGGGTCT TCCAGCATCTTTACTGGAACTTGATCTCGGACACTGCAACTTAACAGATGACATGATTCCCTCTGATCTTCAAGGCTTGCCCCTTCTTCAAAATTTGAAA TTGTGCAGAAACAACTTTACAAGCTTACCAGCTAGCATTGGAAGCCTTCCTAAGCTTACTAGACTTTGGTTAAACGAATGCAAAAGTCTTCAATGTATCC CAGAGCTCCAGTCAAGCCTACAGTTATTGCATGCAAAAGATTGCCTTTCGCTAGAAACCATCAACCTTAAGAACTTTTGGGGGGAGGGAACTTTGGAACT CGATGGTTGCCCAAAGTTAAAAGCAATTGAGGGATACTTCAACTTGGAGTCCTTGGGAATAGAGATTGTTGAAAAATATCTTGGAACTTGTGGCTTGTTC ACAGAAGATTCCCTTCCAAGCATCAATGTCCATGTGATCAATAATCTGACGAGAGCAGCTACAATCAGTCCTCTCCAGGCTCTTTCTGAGAAATCTATTT ACAGTATCTTTCTACCGATGAGTGACATTCCAACATGGTTCAGCCATCAGAATGAAGGTGACTCGGTATCATTGCAGGTGCCTCCACTTGATCATGGTTG CAAATTCAGTGGCTTTTCTATATCGGCAGTCTATGCATGGGAGAGTTCTTCTGCACCTTGCTTTTTCTGCCCCATTATTGCAGTTACTAACAGAACGAAA AATTTCCACTGGAATTATAGCCCAAAAATCACCTTCTTTATGCGCGAGGTGGAACAGGATCTGATGTGGCTTAGCTGCTGGTCATTCGAGAATCAAGTAG AAGGCATTGATGATGAAGATATGAGCTGGAGATTTCGGGATGAGATGGAAGAAGGGGATCGACTGGATGTCTGGATTGACATTGGTTTTCGAATTGCTGT GAAAAGGTGTGGCATCCACTTGCTTTACCATCACAGTGACCTGCAAGGTTCCCGATTAAATGATATAATTACTATTTCACATTCGGGATCGTCAAGACAC CATAGAAGGTTGCTGAGTTCAAGTTTTCAGTGGCTGACATTTAACCGCCCTCGAATAACATCTTCCAAAAACTACTGGGATGATTCTTTCAGGAGATGGT CAGTCAAAAGGGAAGAAAAGACCGATGGGATTCCAGTTGTGCCCCTAAGGAGGAGACATTGTGACTGTTGTGCTCTCTTGCGTTGCACTAAAGAGAAGAA AGACGCATTCAAGATGGAAATAGATCCACTATGA
AA sequence Show only first row Show all	>Potri.002G056100.3 pacid=42777472 polypeptide=Potri.002G056100.3.p locus=Potri.002G056100 ID=Potri.002G056100.3.v4.1 annot-version=v4.1 MASSNSNSTSSKWEYDVFLSFRGADTRSGFTDHLYSALSREGIHTFRDANEIHIGEEIGPECLQGIEKSRFSIVILSKGYASSPWCLDELVHILRCRKEG HGVWPVFYDIDPSDVEEQKGSFEEAFAEHEKSFKDDMDKVEKWRDALREVSYLKGLDLRKHLDGHEAENIDYIVKEISVILDRTILRVAVHPVGLDSRAK EVISLLDDESIDVRIVGIIGMGGIGKTTLAKEVYNLVFKRFEGSCFLENVRQQIISSGIAYLQRQLLSDILKRKHEKIYNVDRGSKVIKERLRCKRVFIV LDDIEDKQEELDKILGNLDWLYPGSRVIITTRIKNLLQPSKLYRQYEVKELNGSDSLQLLSLHAFNKRCPNESYMDSASRIVSYAGGNPLALTVLGSDLC GQNIDVWNSRLEKLKVISHKGTHSILKISYDSLDVAEKSIFLDIACFFIGYKKDYVMSILDGCGFFPIDGINTLTRRCLVKVGANNKFLMHDLLRDMGRE IVLQESFMDPGKRSRLWHKEDVIELLTDRTGTKAVEGLVLSLQGSKRFNTKAFKKMKRLRLLQLNFVCLEGNYEYISNKLRWLCWSEFPLKAIPDDLTLE HLIVLDMRYSSLQQFSEELKSLKKLKFLYLSHSHKLIETPNFEGFPSLEKLKLKDCISLVKVHDSIGLLSHLQFLNLQDCVDLKNLPGSICALSSLKKLN VSGCSKLEELPEHLGSLQSLVLLLADETAISTLPETIGDLKNLEKLSLHGCRLIFSPRKCPPTRRGLPASLLELDLGHCNLTDDMIPSDLQGLPLLQNLK LCRNNFTSLPASIGSLPKLTRLWLNECKSLQCIPELQSSLQLLHAKDCLSLETINLKNFWGEGTLELDGCPKLKAIEGYFNLESLGIEIVEKYLGTCGLF TEDSLPSINVHVINNLTRAATISPLQALSEKSIYSIFLPMSDIPTWFSHQNEGDSVSLQVPPLDHGCKFSGFSISAVYAWESSSAPCFFCPIIAVTNRTK NFHWNYSPKITFFMREVEQDLMWLSCWSFENQVEGIDDEDMSWRFRDEMEEGDRLDVWIDIGFRIAVKRCGIHLLYHHSDLQGSRLNDIITISHSGSSRH HRRLLSSSFQWLTFNRPRITSSKNYWDDSFRRWSVKREEKTDGIPVVPLRRRHCDCCALLRCTKEKKDAFKMEIDPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.014G000700 [exp]	1.41	0.8443
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	4.58	0.8371
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	7.07	0.8408
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.002G257400 [exp]	13.22	0.8049
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	13.26	0.7814
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	13.71	0.7193
AT2G01460			P-loop containing nucleoside t...		Potri.010G111900 [exp]	14.69	0.7650
AT1G19010			unknown protein		Potri.017G074300 [exp]	15.62	0.8120
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.014G000800 [exp]	24.89	0.7298
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	28.00	0.7608

Compare expression of checked genes

Potri.002G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.