Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SCL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21450 707 / 0 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 436 / 2e-148 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 404 / 5e-134 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 395 / 4e-133 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 380 / 9e-126 GRAS SCL13 SCARECROW-like 13 (.1) AT5G52510 253 / 9e-76 GRAS SCL8 SCARECROW-like 8 (.1) AT3G03450 227 / 7e-67 GRAS RGL2 RGA-like 2 (.1) AT1G07530 228 / 2e-65 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 222 / 2e-65 GRAS RGL1 RGA-like 1 (.1) AT3G54220 218 / 1e-62 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186500 [exp] 1057 / 0 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 448 / 4e-152 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 425 / 2e-143 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 409 / 3e-136 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 407 / 8e-136 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 391 / 5e-130 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 384 / 3e-127 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.017G142400 [exp] 290 / 3e-89 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 270 / 5e-82 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029747 [exp] 833 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 825 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 436 / 1e-147 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 422 / 6e-142 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 420 / 8e-142 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 404 / 1e-134 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 387 / 8e-129 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 385 / 3e-127 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 382 / 2e-126 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 307 / 5e-101 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.002G073400.3 pacid=42779599 polypeptide=Potri.002G073400.3.p locus=Potri.002G073400 ID=Potri.002G073400.3.v4.1 annot-version=v4.1 ATGTCTTTAGTTGGACCTGCAGAACTTTCTGCAACACCATACGGAAATCATAAGCTGTACTCACTGAAGGGGAGCAATGACAACTCTGGCTTGTCTGCCC AAATATTCTGCCCTGATAAACGTCAGAACATGTATATGACCGATTCTTACTCCAGTGAGAGTTATGAGAAGTACTTCCTTGATTCCCCAACAGAAGAGCT AATACAACCATCAAGTTCTGGCATTTCAGGGAATTCAGCTCCACCTCAAGGCACATCTTCCTACCAGCTAAGAAAGAATTTAGGTTCATCCATGTCCCCT CAAGATGATCCATACGACGCTTGTTTCACATTGACGACACCCTGTGATGGCTATCAATTCAATTCCGAGTCAGATTACTTGGACATCGAGAGCCCAGATC CACTAAACTATGATGAATATAAGATGAAATTAAAGTTTCAGGAACTTGAGAGAGCGCTTCTAAATGATAATGATGAGGATGGCATGTTTGGAAATAGTCA GAGCATGGAAATGGATGGAGAGTGGTCTGATCCAATCCAGAATGGGATGCTCCATGATTCTCCCAAGGAGTCATCATCTTCTGATTCTAGCCTAAGTAGC ATCAGCAGTAATAAAGAAGTATCACAGTTATCTCCTCGAACTCCCAGGCGATTGCTTTTTGAATGTGCTAATGCAATCTCAGAGGGAAACATTGAGAAAG CATCAACTTTAATAAACGAGCTCCGTCAATTGGTGTCAATTCAAGGAGATCCTCCGCAGAGGATTGCAGCCTACATGGTGGAAGGTCTTGCAGCTCGTAT GGCTGAATCTGGAAAATATCTCTATAAAGCTCTGAAATGCAAGGAACCTCCTTCTTCTGATAGGCTTGCAGCTATGCAGATCCTTTTTGAGATTTGCCCT TGTTTTAAATTTGGATTTATGGCAGCAAATGGTGCAATGATCGAGGCATTTAAAGGTGAAAGGAGAGTTCATATAATAGATTTTGACATAAACCAAGGGA GTCAATACATAACACTGATACAAACACTCGCCAACCATCAAGGTAAGCTACCACACTTGAGGTTAACAGGGGTCGATGACCCTGAGTCAGTTCAACGACC TGTTGGTGGCCTGAGGATCATTGGGCAAAGGCTTGAAAAGCTAGCAGAAGCATATAAGGTCTCGTTCGAGTTTCATGCAGTGGCCTCCAAGACTTCACTT GTCAATCCATCAATGCTGAACTGCAAGCCTGGGGAAGCACTTATAGTTAATTTTGCTTTCCAACTCCACCACATGCCTGATGAGAGTGTTTCAACGGTAA ACGAGAGAGACCAGCTTCTTCGGATGGCTAAGAGCTTGAATCCAAAACTAGTAACTGTTGTTGAGCAAGATGTGAATACTAACACTGCCCCTTTTTTCCC GAGATTCACCGAAGCTTACAACTATTACTCTGCTGTGTTTGACTCTCTTGATGCAACTCTCCCACGGGAGAGCCAGGATAGACTGAATGTTGAGAAACAG TGCCTGGCAAGGGACATAGTGAACATAGTCGCATGTGAGGGAGAGGAAAGGATTGAGCGGTATGAAGTTGCAGGGAAATGGAGAGCAAGGATGATGATGG CTGGCTTCACTTCATGTTCAATCACTCCTAATGTGGTTGATATGATCCGGAAACTCATCAAGGAGTACTGCGATAGATACATGTTGAAGCAGGAAGTAGG TGCGCTTCATTTTGGGTGGGAGGACAAAAGTTTGATTGTTGCTTCAGCATGGAAGTAA
AA sequence Show only first row Show all	>Potri.002G073400.3 pacid=42779599 polypeptide=Potri.002G073400.3.p locus=Potri.002G073400 ID=Potri.002G073400.3.v4.1 annot-version=v4.1 MSLVGPAELSATPYGNHKLYSLKGSNDNSGLSAQIFCPDKRQNMYMTDSYSSESYEKYFLDSPTEELIQPSSSGISGNSAPPQGTSSYQLRKNLGSSMSP QDDPYDACFTLTTPCDGYQFNSESDYLDIESPDPLNYDEYKMKLKFQELERALLNDNDEDGMFGNSQSMEMDGEWSDPIQNGMLHDSPKESSSSDSSLSS ISSNKEVSQLSPRTPRRLLFECANAISEGNIEKASTLINELRQLVSIQGDPPQRIAAYMVEGLAARMAESGKYLYKALKCKEPPSSDRLAAMQILFEICP CFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANHQGKLPHLRLTGVDDPESVQRPVGGLRIIGQRLEKLAEAYKVSFEFHAVASKTSL VNPSMLNCKPGEALIVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYSAVFDSLDATLPRESQDRLNVEKQ CLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCSITPNVVDMIRKLIKEYCDRYMLKQEVGALHFGWEDKSLIVASAWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	0	1	Pt-SCL1.2
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.012G042500 [exp]	2.00	0.8061
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	2.64	0.7777
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	6.48	0.8057
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	6.63	0.7893
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	6.92	0.8024	Pt-EIN3.1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188350 [exp]	13.19	0.7799
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	14.83	0.7315
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411400 [exp]	15.19	0.7423
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	17.32	0.7255
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	17.66	0.7347

Compare expression of checked genes

Potri.002G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.