Plant FIBer expression Database

Potri.002G078100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01170 371 / 4e-123 BAT1 bidirectional amino acid transporter 1 (.1.2)
AT2G34960 54 / 3e-07 CAT5 cationic amino acid transporter 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G100700
[exp]
802 / 0 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078300
[exp]
759 / 0 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078501
[exp]
623 / 0 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2)
Potri.010G119100
[exp]
426 / 2e-144 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.008G125100
[exp]
414 / 6e-140 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.001G378500
[exp]
42 / 0.0009 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028561
[exp]
868 / 0 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2)
Lus10039616
[exp]
786 / 0 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2)
Lus10034628
[exp]
408 / 3e-135 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10035260
[exp]
355 / 3e-118 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10029533
[exp]
179 / 5e-51 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF00324 AA_permease Amino acid permease
Representative CDS sequence
>Potri.002G078100.1 pacid=42777889 polypeptide=Potri.002G078100.1.p locus=Potri.002G078100 ID=Potri.002G078100.1.v4.1 annot-version=v4.1
ATGGGTTCAGGAGTAGAGCATGTTAGCATGGATCAAAAAGCTTTCGGAATTGATTCTGCAGAGAAGCGTCTCAATGAGCTCGGATACAAGCAAGAACTCA
GAAGAGAAATGACATTTTTCAAGACTCTTGCGATTACATTTTCGAGCATGGCAGTTTTTATCGGGACACCTCTCTATGGGTCAAGCCTCCGTTATGCAGG
ACCTGCAAGCTTGATATGGGGATGGGTTGTTGTCACTTTCTTCACTTGGTTTGTTGGGATTGCCATGGCTGAGATTTGCTCTTCTTTCCCCACCACGGGT
TCGCTTTACTTCTGGGCTGCTCATTTGGCTGGACCCAAGTGGGGGCCATTTGCATCCTGGTGCTGCGCTTGGCTCGAGACCATTGGAGCCGTTTCTGGAA
TTGGTGCTCAGGCATATTCAGGAGCCCAAGCACTACAGATGATTATTTTTCTCGCCACTGGAAACAACAAGGGCGGAGGCTACTTCGCTTCAAGAGGTGT
TTTCTTGTGTATGTATATTGGTTTCACTATCACATGGGCAGTACTCAACAGCTTCGCTTTACAAGTCATTGCATTCCTTGGCATTATCTCCATATGGTGG
CAGGTGATTGGGGGTTTAGCAGTGATTGTAATACTTCCTTTGGTGGCACAACAAACACAATCTGCTTCTTTTGTGTTTACTCATTTCGAAACATCACCTG
AGGCAACTGGAATAAGCAGTAAACCTTATGCGGTCATTCTATCTGTGCTGCTAAGCAACTACTGCCTATATGGCTACGACACAGCAGCTCATTTAACCGA
AGAAACAAAAGGTGCTGATAGAACAGGCCCTGCTGCTATTCTTTCCAGTATCGGCATCATCTCAGTTATGGGATGGGCATATTACTTGGCTCTTACTTTC
AGTATCCAGGATTTTAACTATTTGTACGATGTGAACAACGAGACTGCTGGCGTCTTAGTACCAGCACAGATAATCTATGATGCATTCTATGGAAGGTACC
ATAATTCAACTGGAGCAGTAGTTTTTCTATGTATAATCTGGGGATCCTTCTTCTTCTGTGGGCTCTCAGTAACCGCATGTGCTGCCAGAGTGGTCTATGC
CCTATCAAGAGACAATGGGATCCCATTTTCACCTATCTGGAGAACAATTCACCCAAAGTACAAGGTTCCAACAAATGCTGTGTGGCTGTGTGCTGCCATT
AGCATTATTCTTGGACTACCCATCCTGAAGCTTGATGTGATTTTCACAGCCATTGTATCGATAAGCACAATTGGCTGGGTTGGAGGCTATGCTGTGCCAA
TATTTGCAAGGCTTGTCATGGCTGAGAAAAACTTCAAACCAGGGCCCTTTTATTTGGGTAGAGCAAGAAGGCCCATTTGCTTGGTAGCGTTCTTATGGAT
ATGTTACACTTGTTCAGCCTTCCTCTTGCCAACTCTCTACCCCATCCAGTGGAAAACTTTCAACTATGCACCACTAGCTATTGGTATGTTTTTTACGCTG
ATAATGCTTTGGTGGGCGTTTGATGCTAGAAAATGGTTCAAGGGACCCGTAAGGAATATTGATTTACAAAATGTCATATTTAAGGCTTGA
AA sequence
>Potri.002G078100.1 pacid=42777889 polypeptide=Potri.002G078100.1.p locus=Potri.002G078100 ID=Potri.002G078100.1.v4.1 annot-version=v4.1
MGSGVEHVSMDQKAFGIDSAEKRLNELGYKQELRREMTFFKTLAITFSSMAVFIGTPLYGSSLRYAGPASLIWGWVVVTFFTWFVGIAMAEICSSFPTTG
SLYFWAAHLAGPKWGPFASWCCAWLETIGAVSGIGAQAYSGAQALQMIIFLATGNNKGGGYFASRGVFLCMYIGFTITWAVLNSFALQVIAFLGIISIWW
QVIGGLAVIVILPLVAQQTQSASFVFTHFETSPEATGISSKPYAVILSVLLSNYCLYGYDTAAHLTEETKGADRTGPAAILSSIGIISVMGWAYYLALTF
SIQDFNYLYDVNNETAGVLVPAQIIYDAFYGRYHNSTGAVVFLCIIWGSFFFCGLSVTACAARVVYALSRDNGIPFSPIWRTIHPKYKVPTNAVWLCAAI
SIILGLPILKLDVIFTAIVSISTIGWVGGYAVPIFARLVMAEKNFKPGPFYLGRARRPICLVAFLWICYTCSAFLLPTLYPIQWKTFNYAPLAIGMFFTL
IMLWWAFDARKWFKGPVRNIDLQNVIFKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01170 BAT1 bidirectional amino acid trans... Potri.002G078100
[exp]
0 1
AT1G08500 AtENODL18 early nodulin-like protein 18 ... Potri.014G072700
[exp]
2.00 0.7421
Potri.003G046750
[exp]
11.74 0.7384
AT1G69490 NAC NAP, ANAC029, A... Arabidopsis NAC domain contain... Potri.016G088300
[exp]
18.89 0.6494
AT2G24130 Leucine-rich receptor-like pro... Potri.003G184100
[exp]
27.49 0.7022
Potri.009G003650
[exp]
41.02 0.6709
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Potri.008G099201
[exp]
51.59 0.6480
AT1G07650 Leucine-rich repeat transmembr... Potri.018G145536
[exp]
54.68 0.6619
AT1G58602 LRR and NB-ARC domains-contain... Potri.011G031312
[exp]
89.91 0.6313
Potri.002G111832
[exp]
90.49 0.6327
AT5G05070 DHHC-type zinc finger family p... Potri.006G027500
[exp]
109.61 0.6026

Potri.002G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.