Plant FIBer expression Database

Potri.002G078300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01170 268 / 2e-86 BAT1 bidirectional amino acid transporter 1 (.1.2)
AT2G34960 51 / 7e-07 CAT5 cationic amino acid transporter 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G078100
[exp]
757 / 0 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078501
[exp]
624 / 0 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2)
Potri.007G100700
[exp]
617 / 0 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2)
Potri.010G119100
[exp]
324 / 5e-107 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.008G125100
[exp]
320 / 4e-105 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.001G378500
[exp]
45 / 7e-05 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Potri.003G154600
[exp]
41 / 0.001 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028561
[exp]
667 / 0 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2)
Lus10039616
[exp]
598 / 0 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2)
Lus10035260
[exp]
301 / 5e-99 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10034628
[exp]
299 / 3e-95 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10029533
[exp]
113 / 8e-28 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF13520 AA_permease_2 Amino acid permease
Representative CDS sequence
>Potri.002G078300.2 pacid=42778882 polypeptide=Potri.002G078300.2.p locus=Potri.002G078300 ID=Potri.002G078300.2.v4.1 annot-version=v4.1
ATGATTATTTTTCTCGCCACTGGAAACAACAAGGGCGGAGGCTACTTCGCTTCAAGAGGTGTTTTCTTGTGTATGTATATTGGTTTCACTATCACGTGGG
CAGTACTCAACAGCTTCGCTTTACAAGTCATTGCATTCCTTGGCATTATCTCCATATGGTGGCAGGTGATTGGGGGTTTAGCAGTGATTGTAATGCTTCC
TTTGGTGGCACAACAAACACAATCTGCTTCGTTTGTGTTCACTCATTTCGAAACATCACCCGAGGCAACTGGAATAAGCAGTAAACCTTATGCCGTCATT
CTATCTGTGCTGCTAAGCAACTACTGCCTATATGGCTACGACACCGCGGCTCATTTAACCGAAGAAACAAAAGGTGCTGATAGAACAGGCCCTGCTGCAA
TTCTTTCCAGTATTGGCATTATCTCTGTTTTTGGATGGGCATATTACTTGGCTCTTACCTTCAGTATCCAGGATTTTAACTATTTGTACGATGAGAACAA
CGAGACTGTTGGTGCACTAGTACCAGCACAGATAATCTATGATGCATTCTATGGAAGGTATCATAATTCAACTGGAGCAGTAGTTTTTCTATGTATCATC
TGGGGATCCTTCTTCTTCTGTGGGCTCTCAGTAACAGCAAGTGCTGCCAGAGTGGTCTATGCGCTATCAAGAGACAATGGGATCCCATTTTCACCTATCT
GGAGAAAAATTCACCCAAAGTACAAGGTTCCAACAAATGCTGTGTGGCTGTGTGCTGCCATTAGCATTATTCTTGGACTACCCATCCTGAAGCTTGATGT
GATTTTCACAGCCATTGTATCGATAAGCACAATTGGCTGGGTTGGAGGCTATGCGGTGCCAATATTTGCAAGGCTTGTCATGGCTGAGAAAAACTTCAAA
CCAGGACCCTTTTATTTGGGTAGAGCAAGAAGGCCCATTTGCTTGGTGGCGTTCTTATGGATATGTTACACTTGTTCAGCCTTCCTCTTGCCAACTCTCT
ACCCCATCCAGTGGAAAACTTTCAACTATGCACCAGTAGCCGTTGGCATGTTTTTGACGCTGATAATGCTTTGGTGGGCGTTTGATGCTAGAAAATGGTT
CAAGGGACCCGTAAGGAATATTGATTTACAAAATGTCATATTTAAGGCTTGA
AA sequence
>Potri.002G078300.2 pacid=42778882 polypeptide=Potri.002G078300.2.p locus=Potri.002G078300 ID=Potri.002G078300.2.v4.1 annot-version=v4.1
MIIFLATGNNKGGGYFASRGVFLCMYIGFTITWAVLNSFALQVIAFLGIISIWWQVIGGLAVIVMLPLVAQQTQSASFVFTHFETSPEATGISSKPYAVI
LSVLLSNYCLYGYDTAAHLTEETKGADRTGPAAILSSIGIISVFGWAYYLALTFSIQDFNYLYDENNETVGALVPAQIIYDAFYGRYHNSTGAVVFLCII
WGSFFFCGLSVTASAARVVYALSRDNGIPFSPIWRKIHPKYKVPTNAVWLCAAISIILGLPILKLDVIFTAIVSISTIGWVGGYAVPIFARLVMAEKNFK
PGPFYLGRARRPICLVAFLWICYTCSAFLLPTLYPIQWKTFNYAPVAVGMFLTLIMLWWAFDARKWFKGPVRNIDLQNVIFKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01170 BAT1 bidirectional amino acid trans... Potri.002G078300
[exp]
0 1
AT2G30210 LAC3 laccase 3 (.1) Potri.013G152700
[exp]
1.00 0.9727
Potri.002G177700
[exp]
2.82 0.9430
AT1G65870 Disease resistance-responsive ... Potri.016G060700
[exp]
3.74 0.9612
AT2G35930 PUB23 plant U-box 23 (.1) Potri.001G216100
[exp]
5.29 0.9524
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.002G080500
[exp]
6.48 0.9527
AT3G05950 RmlC-like cupins superfamily p... Potri.019G026700
[exp]
8.36 0.9480
AT4G35160 O-methyltransferase family pro... Potri.004G050500
[exp]
8.94 0.9395 FOMT1,OOMT2.17
AT3G05950 RmlC-like cupins superfamily p... Potri.019G025800
[exp]
10.90 0.9435
AT5G39130 RmlC-like cupins superfamily p... Potri.013G063050
[exp]
11.22 0.9429
AT1G74110 CYP78A10 "cytochrome P450, family 78, s... Potri.003G173500
[exp]
13.41 0.9268

Potri.002G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.