Plant FIBer expression Database

Potri.002G078501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01170 241 / 1e-74 BAT1 bidirectional amino acid transporter 1 (.1.2)
AT2G34960 51 / 2e-06 CAT5 cationic amino acid transporter 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G078300
[exp]
619 / 0 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078100
[exp]
615 / 0 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2)
Potri.007G100700
[exp]
531 / 0 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2)
Potri.010G119100
[exp]
278 / 4e-88 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.008G125100
[exp]
275 / 1e-86 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.001G378500
[exp]
45 / 0.0001 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028561
[exp]
559 / 0 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2)
Lus10039616
[exp]
513 / 2e-179 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2)
Lus10035260
[exp]
267 / 1e-84 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10034628
[exp]
266 / 2e-81 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10029533
[exp]
161 / 8e-45 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF13520 AA_permease_2 Amino acid permease
Representative CDS sequence
>Potri.002G078501.3 pacid=42777854 polypeptide=Potri.002G078501.3.p locus=Potri.002G078501 ID=Potri.002G078501.3.v4.1 annot-version=v4.1
ATGGGTTCAGGAGTAGAGCATGTTAGCATGGATCAAACAGCTTTCGGAATTGATTCTGCAGAGAAGCGTCTCAATGAGCTCGGATACAAGCAAGAACTCA
GAAGAGAAATGACATTTTTCAAGACTCTTGCGATTACATTTTCGAGCATGGCAGTTTTTATCGGGACACCTCTCTATGGGTCAAGCCTCCGTTATGCAGG
ACCTGCAAGCTTGATATGGGGATGGGTTGTTGTCACTTTCTTCACTTGGTTTGTTGGGATTGCCATGGCTGAGATTTGCTCTTCTTTCCCCACCACGGGT
TCGCTTTACTTCTGGGCTGCTCATTTGGCTGGACCCAAGTGGGGGCCATTTGCATCCTGGTTCTGCGCTTGGCTCGAGACCATTGGAGCCGTTTCTGGAA
TTGGTGGTCAGGTGATTGGGGGTGTAGCAGTGATTGTAATTCTTCCTTTGGTGGCACAACAAACACAATCTGCTTCTTTTGTGTTCACTCATTTTGAAAC
ATCACCCGAGGCAACTGGAATAAGTAGTAAACCTTATGCGGTCATTCTATCTGTGCTGCTAAGCAACTACTGCCTATATGGCTACGACACCGCGGCTCAT
TTAACCGAAGAAACAAAAGGTGCTGATAGAACAGGCCCTGCTGCAATTCTTTCCAGTATTGGCATTATCTCTGTTTTTGGTTGGGCATATTACTTGGCTC
TTACTTTCAGTATCCAGGATTTTAACTATTTGTACGATGTGAACAACGAGACTGCTGGCGCCTTAGTACCAGCGCAGATAATTTATGATGCATTTCAAGG
AAGGTACCATAATTCAACTGGAGCAGTAGTTTTTCTATGTATCATCTGGGGTTCCTTCTTCTTCTGTGGGCTTTCAGTAACTACAAGTGCTGCCAGAGTG
GTCTATGCTCTATCAAGAGACAATGGGATCCCATTTTCACCTATCTGGAGAAGAATTCATCCAAAGTACAAGGTTCCAACAAATGCTGTGTGGCTGTGTG
CTGCCATTAGCATTATTCTTGGACTACCCATCCTGAAGCTTGATGTTGTTTTCACAGCCATTATATCGATAAATACAATTGGCTGGGTTGGAGGCTATGC
CGTGCCAATATTTGCAAGGCTTGTCATGGATGAGAAAAACTTCAAACCAGGACCTTTTTATTTGGGTAGAGCAAGAAGGCCCATTTACTTGGTGGCGTTC
TTATGGATATGTTACACTTGTTCAGCCTTCCTCTTGCCAACTCTCTACCCAATCCAGTGGAAAACTTTCAACTATGCACCAATTGCCATTGGCATATTTT
TGACGCTGATAATGCTTTGGTGGGCGTTTGATGCTAGAAAATGGTTCAAGGGACCCGTAAGGAATATCGATTTACAAAATGGTCATAGTTGA
AA sequence
>Potri.002G078501.3 pacid=42777854 polypeptide=Potri.002G078501.3.p locus=Potri.002G078501 ID=Potri.002G078501.3.v4.1 annot-version=v4.1
MGSGVEHVSMDQTAFGIDSAEKRLNELGYKQELRREMTFFKTLAITFSSMAVFIGTPLYGSSLRYAGPASLIWGWVVVTFFTWFVGIAMAEICSSFPTTG
SLYFWAAHLAGPKWGPFASWFCAWLETIGAVSGIGGQVIGGVAVIVILPLVAQQTQSASFVFTHFETSPEATGISSKPYAVILSVLLSNYCLYGYDTAAH
LTEETKGADRTGPAAILSSIGIISVFGWAYYLALTFSIQDFNYLYDVNNETAGALVPAQIIYDAFQGRYHNSTGAVVFLCIIWGSFFFCGLSVTTSAARV
VYALSRDNGIPFSPIWRRIHPKYKVPTNAVWLCAAISIILGLPILKLDVVFTAIISINTIGWVGGYAVPIFARLVMDEKNFKPGPFYLGRARRPIYLVAF
LWICYTCSAFLLPTLYPIQWKTFNYAPIAIGIFLTLIMLWWAFDARKWFKGPVRNIDLQNGHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01170 BAT1 bidirectional amino acid trans... Potri.002G078501
[exp]
0 1
AT5G39110 RmlC-like cupins superfamily p... Potri.013G052300
[exp]
4.12 0.9480
AT3G07990 SCPL27 serine carboxypeptidase-like 2... Potri.010G220200
[exp]
6.00 0.9413
AT2G43390 unknown protein Potri.007G130200
[exp]
9.89 0.9437
AT4G31140 O-Glycosyl hydrolases family 1... Potri.018G000900
[exp]
14.42 0.9319
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G165300
[exp]
15.16 0.9242
AT1G61590 Protein kinase superfamily pro... Potri.001G128500
[exp]
16.49 0.9397
AT5G49350 Glycine-rich protein family (.... Potri.008G108400
[exp]
16.61 0.9380
AT2G01170 BAT1 bidirectional amino acid trans... Potri.007G100700
[exp]
17.17 0.9391
AT4G12430 TPPF trehalose-6-phosphate phosphat... Potri.003G112400
[exp]
17.60 0.8785
AT4G12432 CPuORF26 conserved peptide upstream ope... Potri.003G112350
[exp]
19.13 0.8872

Potri.002G078501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.