Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 765 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 736 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 714 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 710 / 0 AAP5 amino acid permease 5 (.1) AT1G58360 575 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 568 / 0 AAP6 amino acid permease 6 (.1) AT1G10010 561 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 431 / 5e-148 AAP7 amino acid permease 7 (.1.2) AT5G40780 154 / 2e-41 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 151 / 2e-40 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080066 [exp] 932 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 888 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 875 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 866 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 818 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 769 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 761 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 702 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 592 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 773 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 742 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 722 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 709 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 688 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 687 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 684 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 671 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 586 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 560 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.002G079400.1 pacid=42778205 polypeptide=Potri.002G079400.1.p locus=Potri.002G079400 ID=Potri.002G079400.1.v4.1 annot-version=v4.1 ATGACGATGGGTGAGAACACATCCGCAAAGAACCAACTCCCTCACCAGGTTTTCAGCGTCTCAATTGACACCAATCCACAGAGTGGCTCCAAGTGGTTTG ATGATGATGGCCGCCCCAAACGAACTGGAAATGTGTGGACTGCAAGTGCTCACATCATAACAGCTGTTATTGGGTCTGGAGTTCTCTCCTTGGCTTGGGC TATTGGTCAGCTTGGATGGATTGCTGGACCAGCTGTGATGCTTTTGTTCTCGCTTGTCACTTACTATACTTCTATTCTGCTCTCTGCCTGCTACCGCTCT GGTGATCCTGTCAATGGCAAGAGGAACTACACCTACATGGACGCTGTTCGGGCCAACCTTGGTGGAGGAAAGGTCAAAATATGTGGATTTGTGCAGTATG TGAACCTTTTTGGTGTTGCAATTGGCTACACAATTGCATCTTCTATAAGCATGATGGCAATAAAGAGGTCTAATTGCTTCCACCAGAGTGGTGGACAAGA TCCATGCCACATGAATGCCTATCCATATATGATAGCTTTTGGCATAGCTGAGATTCTTTTGTCTCAGATTCCTGGATTTGATCAGCTACACTGGCTCTCT CTTGTCGCTGCAGTCATGTCCTTCACTTATTCATCAATTGGTCTAGGACTCGGCATTGGTAAAGTTGTAGAAAATAAAAGAGTCATGGGAAGTCTCACTG GAATAAGCATTGGCACTGTGACACAGACCCAAAAGATATGGAGGAGCTTTCAAGCACTTGGTGACATCGCTTTTGCCTATTCTTACTCCATGATCCTCAT TGAAATTCAGGACACAGTCAAAGCCCCACCTACAGAAGCCAAGACGATGAAGAAAGCAACTCTAATAAGTGTTGCAGTCACAACCCTTTTCTACATGTTC TGTGGTTGCTTTGGATATGCTGCTTTTGGAGACCTATCCCCTGGCAACCTCCTCACTGGATTTGGCTTTTACAATCCATATTGGCTACTTGACATTGCCA ATGCTGCCATTGTAATCCACCTTGTAGGTGCATACCAAGTTTACTGCCAACCCCTCTTTGCCTTTGTTGAAAAAGAAGCAGCCCGAAGATTCCCAGATAG TGACTTCGTTACCAAAGATATCAAAATCTCAATCCCTGGTCTCGGTCCATACAATCTCAACCTCTTCAGAATGATTTGGAGGACACTCTTTGTGGTTACA ACCACTGTGATTTCAATGCTCCTTCCCTTCTTTAACGACATAGTTGGCCTCCTTGGGGCTTTGGGATTTTGGCCATTGACCGTTTACTTCCCTGTTGAGA TGTATATTTCACAGAAGAAGATACCAAAATGGAGCACAAGATGGCTTTGCCTCCAAATCCTAAGTGTTGCTTGCCTGATTATTACCATAGCTGCTGCTGC TGGTTCTATTGCTGGAGTTCTTGATGATGTCAAGACTATCAAGCCCTTCCAGACCAGTTATTAG
AA sequence Show only first row Show all	>Potri.002G079400.1 pacid=42778205 polypeptide=Potri.002G079400.1.p locus=Potri.002G079400 ID=Potri.002G079400.1.v4.1 annot-version=v4.1 MTMGENTSAKNQLPHQVFSVSIDTNPQSGSKWFDDDGRPKRTGNVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPAVMLLFSLVTYYTSILLSACYRS GDPVNGKRNYTYMDAVRANLGGGKVKICGFVQYVNLFGVAIGYTIASSISMMAIKRSNCFHQSGGQDPCHMNAYPYMIAFGIAEILLSQIPGFDQLHWLS LVAAVMSFTYSSIGLGLGIGKVVENKRVMGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSMILIEIQDTVKAPPTEAKTMKKATLISVAVTTLFYMF CGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVYCQPLFAFVEKEAARRFPDSDFVTKDIKISIPGLGPYNLNLFRMIWRTLFVVT TTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYISQKKIPKWSTRWLCLQILSVACLIITIAAAAGSIAGVLDDVKTIKPFQTSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079400 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	1.00	0.9106
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	3.46	0.7839
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	4.58	0.7866
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	9.74	0.7237
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	12.72	0.7475
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	13.49	0.7588
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	17.74	0.7815
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073801 [exp]	19.33	0.7472
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	21.90	0.7468
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	25.29	0.7488

Compare expression of checked genes

Potri.002G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.