Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 756 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 714 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 706 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 683 / 0 AAP5 amino acid permease 5 (.1) AT5G49630 550 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 546 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 538 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 435 / 1e-149 AAP7 amino acid permease 7 (.1.2) AT1G48640 152 / 7e-41 Transmembrane amino acid transporter family protein (.1) AT5G40780 150 / 3e-40 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080066 [exp] 890 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 872 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 862 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 835 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 820 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 759 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 759 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 681 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 575 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 751 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 724 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 719 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 711 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 686 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 680 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 676 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 649 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 557 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 541 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.002G079700.1 pacid=42777419 polypeptide=Potri.002G079700.1.p locus=Potri.002G079700 ID=Potri.002G079700.1.v4.1 annot-version=v4.1 ATGGGTGAGAACACATCCGCAGAGAACCAACTCCCTCACCAGGTTTTCAGCGTCTCAATTGACACCAATCCACGAAGTGGCTCCGAGTGGTTTGATGATG ATGGCCGCCCCAAACGAACTGGAACTGTGTGGACTGCAAGTGCTCACATCATAACAGCTGTTATTGGGTCTGGAGTTCTCTCCTTGGCTTGGGCTATTGG TCAGCTTGGATGGATTGCTGGACCAGCTGTGATGCTTTTGTTCTCGCTTGTCACTTACTATACTTCGACTCTGCTCTCCGCCTGCTACCGCTCTGGTGAT CCTATTACCGGCAAGAGAAACTACACCTACATGGATGTTGTTCGGGCCAATCTTGGTGATGTTAAGGTCAAGATATGTGGATTTGTTCTGTACCTGAATC CTTTTGGAGTTGCCACTGGCTACACAATTGCATCATCTATAAGCATGATGGCAATAAAGAGGTCAAATTGTTTTCACAAGAGTGGTGGAAAAAATCCATG CCGTATGAATGCCAATCCATATATGATAGGGTTTGGTATAACTGAGATACTTTTGTCTCAAATTCCTGGATTTGATCAGTTACACTGGCTCTCTCTTGTC GCTGCAGTCATGTCCTTCACTTACGCATCAATTGGTCTAGGTCTTGGCATTGGTAAAGTTATAGAAAATGGAAAAATTAGTGGAAGTCTAACTGGAATAA GCATTGGCACTGTGACTCAAACCCAAAAGATATGGATTAGCTTCCAAGCACTCGGTAACATTGCTTTTGCCTATTCTTTCTCCATGATCCTCGTTGAAAT TCAGGACACAATCAAATCCCCACCATCAGAAGCCAAGACAATGAAGAAGGCAACTCTAATAAGTGTTGTAGTCACAACCCTTTTCTACATGTTCTGTGGC TGCTTTGGCTATGCTGCTTTTGGGGACTTGTCCCCTGGAAACCTCCTTACTGGATTTGGCTTTTATAACCCATACTGGCTTCTTGATATTGCCAATGCTG CCATAGTGATTCACCTTGTTGGCGCATACCAGGTCTCCTGCCAACCTCTCTATGCTTTCATCGAAAAAGAAGCAGCTCAAAGATTTCCAGATAGTGAATT CATTACGAAAGACATCAATATCCCGATTCCTGGTTTCCGCCCCTACAATCTCAATCTCTTTAGAATGATTTGGAGGACCCTCTTTGTGGTCCTCACCACT GTGATTTCAATGCTCCTTCCCTTCTTTAATGACATAGTTGGTTTACTTGGGGCTTTGGGATTTTGGCCATTGACGGTTTACTTCCCTGTGGAGATGTATA TTGTACAAAAGAAGATACCAAAGTGGAGCACAAGATGGCTCTGCCTGCAGATCCTAAGTGTTGCTTGCCTCATTATCACTATAGCTGCCGCTGCTGGCTC TGTTGCTGGAATTGTCGGCGATCTCAAGTCGATCAAACCCTTCCAGACCAGTTACTAA
AA sequence Show only first row Show all	>Potri.002G079700.1 pacid=42777419 polypeptide=Potri.002G079700.1.p locus=Potri.002G079700 ID=Potri.002G079700.1.v4.1 annot-version=v4.1 MGENTSAENQLPHQVFSVSIDTNPRSGSEWFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPAVMLLFSLVTYYTSTLLSACYRSGD PITGKRNYTYMDVVRANLGDVKVKICGFVLYLNPFGVATGYTIASSISMMAIKRSNCFHKSGGKNPCRMNANPYMIGFGITEILLSQIPGFDQLHWLSLV AAVMSFTYASIGLGLGIGKVIENGKISGSLTGISIGTVTQTQKIWISFQALGNIAFAYSFSMILVEIQDTIKSPPSEAKTMKKATLISVVVTTLFYMFCG CFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVSCQPLYAFIEKEAAQRFPDSEFITKDINIPIPGFRPYNLNLFRMIWRTLFVVLTT VISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIVQKKIPKWSTRWLCLQILSVACLIITIAAAAGSVAGIVGDLKSIKPFQTSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079700 [exp]	0	1
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	2.44	0.8304	Pt-ALA5.2
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	11.40	0.7482
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	11.66	0.7838
AT4G33565			RING/U-box superfamily protein...		Potri.007G111900 [exp]	13.74	0.7657
AT3G10540			3-phosphoinositide-dependent p...		Potri.010G232800 [exp]	21.35	0.7200
AT5G57700			BNR/Asp-box repeat family prot...		Potri.006G175161 [exp]	25.84	0.7653
AT1G69370		CM-3, CM3	chorismate mutase 3 (.1)		Potri.010G162300 [exp]	26.53	0.7464
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	28.98	0.7452
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	31.30	0.7537	COMTL3,Pt-GSI.2
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G274133 [exp]	37.56	0.7301

Compare expression of checked genes

Potri.002G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.