Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 751 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 714 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 699 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 680 / 0 AAP5 amino acid permease 5 (.1) AT1G58360 550 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 542 / 0 AAP6 amino acid permease 6 (.1) AT1G10010 536 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 429 / 3e-145 AAP7 amino acid permease 7 (.1.2) AT1G21690 188 / 2e-54 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G48640 150 / 2e-39 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079400 [exp] 912 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 874 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 867 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 848 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 810 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 754 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 749 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 673 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 563 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 753 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 714 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 706 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 694 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 671 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 666 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 659 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 647 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 551 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 537 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.002G080066.1 pacid=42777130 polypeptide=Potri.002G080066.1.p locus=Potri.002G080066 ID=Potri.002G080066.1.v4.1 annot-version=v4.1 ATGCTCAGGATCATAGAGCCACTTGCGTCAAGATGTGCAAAATTCAGGTTCAAGCCACTTTCAGAAGAAATCACAAGCAGTCGTATATTGCACATTTGTA ATGAAGAAGGCCTCACTCTGGACGGAGAGGCTCTCTCAACCTTGAGTTCTATCTCACAAGGTGATCTTTGCCGGGCTATCACATACTTGCAAGGAGCTGC TCGCCTATTTGGATCGTCAATTTCATCCGAAGACCTTATAAGTGTATCTGGGGCCATTCGGCAAGAGGTTACTGAGGCACTTTATGAAGCATGCAAAAGT GGTGACTTTGATTTGGCGAACAAGGAAGTCAATAATATAATTGCGGAAGGATATCCAGTATCTCAGATCCTTGCTCAGATGGGTGAGAACACATCCGCAA AGAACCAACTCCCTCACCAGGTTTTCAGCGTCTCAATTGACACCAATCCACAGAGTGGCTCCAAGTGGTTTGATGATGATGGCCGCCCCAAACGAACTGG AACTGTGTGGACTGCAAGTGCTCACATCATAACAGCTGTTATTGGGTCCGGAGTTCTCTCCTTGGCTTGGGCTATTGGTCAGCTTGGATGGATTGCTGGA CCAGCTGTGATGCTTTTGTTCTCGCTTGTCACTTACTATACTTCTATTCTGCTCTCTGCCTGCTACCGCTCTGGTGATCCTGTCAATGGCAAGAGGAACT ACACCTACATGGATGCTGTTCGGGCCAACCTTGGTGGAGGAAAGGTCAAAATATGTGGATTTGTGCAGTATGTGAACCTTTTTGGTGTTGCCATTGGCTA CACAATTGCATCTTCTATAAGCATGATGGCAATAAAGAGGTCTAATTGCTTCCACCAGAGTGGTGGACAAGATCCATGCCACATGAATGCCTATCCATAT ATGATAGCTTTTGGCATAGCTGAGATTCTTTTGTCTCAGATTCCTGGATTTGATCAGCTACACTGGCTCTCTCTTGTCGCTGCAGTCATGTCCTTCACTT ATTCATCAATTGGTCTAGGACTCGGCATTGGTAAAGTTGTAGAAAATAAAAGAGTCATGGGAAGTCTCACTGGAATAAGCATTGGCACTGTGACACAGAC CCAAAAGATATGGAGGAGCTTTCAAGCACTTGGTGACATCGCTTTTGCCTATTCTTACTCCATGATCCTCATTGAAATTCAGGACACAGTCAAAGCCCCA CCTACAGAAGCCAAGACGATGAAGAAAGCAACTCTAATAAGTGTTGCAGTCACAACCCTTTTCTACATGTTCTGTGGTTGCTTTGGATATGCTGCTTTTG GGGACTTGTCCCCTGGAAACCTCCTTACTGGATTTGGCTTTTATAACCCATACTGGCTTCTTGATATTGCCAATGCTGCCATGGTGATTCACCTTGTTGG CATATACCAGTTCTCCTGCCAACCTCTCTATGCTTTCATCGAAAAAGAAGCAGCTCAAAGATTTCCAGATAGTGAATTCATTACGAAAGACATCAAAATC CCGATTCCTGGTTTCCGCCCCTACAATCTCAATCTCTTTAGAATGATTTGGAGGACCCTCTTTGTGGTCCTCACCACTGTGATTTCAATGCTCCTTCCCT TCTTTAATGACATAGTTCGTTTACTTGGGGCTTTGGGATTTTGGCCATTGACGGTTTACTTCCCTGTGGAGATGTATATTGTACAAAAGAAGATACGAAA GTGGAGCACAAGATGGCTCTGCCTGCAGATCCTAAGTGTTGCTTGCCTCATTATCAGTATAGCTGCCGCTGCTGGCTCTGTTGCTGGAATTGTCGGCGAT CTCAAGTCGATCAAACCCTTCCAGACCAGTTACTAA
AA sequence Show only first row Show all	>Potri.002G080066.1 pacid=42777130 polypeptide=Potri.002G080066.1.p locus=Potri.002G080066 ID=Potri.002G080066.1.v4.1 annot-version=v4.1 MLRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEALSTLSSISQGDLCRAITYLQGAARLFGSSISSEDLISVSGAIRQEVTEALYEACKS GDFDLANKEVNNIIAEGYPVSQILAQMGENTSAKNQLPHQVFSVSIDTNPQSGSKWFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAG PAVMLLFSLVTYYTSILLSACYRSGDPVNGKRNYTYMDAVRANLGGGKVKICGFVQYVNLFGVAIGYTIASSISMMAIKRSNCFHQSGGQDPCHMNAYPY MIAFGIAEILLSQIPGFDQLHWLSLVAAVMSFTYSSIGLGLGIGKVVENKRVMGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSMILIEIQDTVKAP PTEAKTMKKATLISVAVTTLFYMFCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAMVIHLVGIYQFSCQPLYAFIEKEAAQRFPDSEFITKDIKI PIPGFRPYNLNLFRMIWRTLFVVLTTVISMLLPFFNDIVRLLGALGFWPLTVYFPVEMYIVQKKIRKWSTRWLCLQILSVACLIISIAAAAGSVAGIVGD LKSIKPFQTSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079400 [exp]	1.00	0.9106
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	1.73	0.8671
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	2.00	0.8756
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073801 [exp]	9.48	0.8228
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	9.74	0.8316
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	9.79	0.8495
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.001G410400 [exp]	12.08	0.8069	Pt-DFL1.1,GH3-6
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	14.07	0.8423
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014700 [exp]	23.23	0.8345
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	26.40	0.8172

Compare expression of checked genes

Potri.002G080066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.