Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21690 504 / 2e-180 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 161 / 2e-46 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G77470 161 / 6e-46 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 83 / 2e-17 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT5G45720 48 / 1e-05 AAA-type ATPase family protein (.1.2) AT4G18820 48 / 1e-05 AAA-type ATPase family protein (.1) AT5G22010 45 / 6e-05 ATRFC1 replication factor C 1, replication factor C1 (.1) AT4G04180 43 / 0.0004 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G64580 42 / 0.0005 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181300 [exp] 572 / 0 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G080066 [exp] 223 / 5e-67 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G081200 [exp] 170 / 4e-49 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 164 / 2e-47 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.019G040000 [exp] 82 / 6e-17 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G044900 [exp] 54 / 2e-07 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 53 / 3e-07 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G061700 [exp] 52 / 6e-07 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 48 / 9e-06 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028543 [exp] 520 / 0 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 169 / 7e-49 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10024504 [exp] 166 / 5e-48 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10018144 [exp] 165 / 2e-47 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10008003 [exp] 163 / 5e-47 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10018130 [exp] 78 / 1e-17 AT1G21690 70 / 2e-15 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10019391 [exp] 82 / 4e-17 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 81 / 2e-16 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10041764 [exp] 55 / 6e-08 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 52 / 5e-07 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0604 [poplar] [flax] post-AAA PF08542 [poplar] [flax] Rep_fac_C Replication factor C C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G080100.2 pacid=42779508 polypeptide=Potri.002G080132.1.p locus=Potri.002G080100 ID=Potri.002G080100.2.v4.1 annot-version=v4.1 ATGGTGCGCATGTCGACTGTCACCGAAGAACCAAACAAACCAGCATCACACAGCACAACGGCCAAAACTCTACTAAAAGCGGGAAAATGGAACTGCCCCT GCGGAGGCAAGGCGCCATTACTGCAGAGCTTACAACCATGGTCGACCAAAGCAAGTAAAAGATGCAGCTCATCAAGACACCAAGACGAGGTGGTTCGCGT CCTCACTAACACTCTCGAGACTGCAAATTGCCCTCACATGCTTTTTTATGGCCCACCTGGTACCGGCAAAACCACCACTGCCCTGGCTATTGCTCACCAG CTTTACGGGCCTGAACTCTACAAGTCTATGGTTTTGGAACTAAATGCAAGGGATGACCGTGGAATCAATGTTGTTCAGACTAGGATCAAAGATTTTGCTG CTGTGGCTGTAGGTTCTGGTCAGTGTCAAGGGGGTTACCCTTGTCCACCATATAAGATTACCATCCTAGACGAGGCAGATTCTATGACTGAAGATGCTCA GGCATTGCATGGGTATCACCTCATTTGGCATAATGCCCTGAGACTTACAATGGAAACTTTCTCCAAAGTTACAAGATTCTTCTTCATATGTAATTACATC AGCAGGATCATAGAGCCACTTGCGTCAAGATGTGCAAAATTCAGGTTCAAGCCACTTTCAGAAGAAATCACAAGCAGTCGTATATTGCACATTTGTAATG AAGAAGGCCTCACTCTGGACGCAGAGGCTCTCTCAACCTTGAGTTCTATCTCACAAGGTGATCTTTGCCGGGCTATCACATACTTGCAAGGAGCTGCTCG CCTATTTGGATCGTCAATTTCATCCAAAGACCTTATAAGTGTATCTGGGGCCATTCCGCAAGAGGTTACTGAGGCACTTTATGAAGCATGCAAAAGTGGT GACTTTGATTTGGCGAACAAGGAAGTCAATAATATAATTGCGGAAGGATATCCAGTATCTCAGATCCTTGCTCAGTTATTTGAGGTGGTGGTTGAAGCAG ATGATTTATCAAATGAACGAAAGGCTTGCATGTGCAAGAGTTTGGCTACAGCTGATAAATGTCTCATTGATGGTGCTGATGAGTATTTGCAGCTGCTGGA TGTGGCTAGCAACACAATGCGAGCTCTCTGTAACATGCCACAAGAACGTTATTATGATAGTTAG
AA sequence Show only first row Show all	>Potri.002G080100.2 pacid=42779508 polypeptide=Potri.002G080132.1.p locus=Potri.002G080100 ID=Potri.002G080100.2.v4.1 annot-version=v4.1 MVRMSTVTEEPNKPASHSTTAKTLLKAGKWNCPCGGKAPLLQSLQPWSTKASKRCSSSRHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ LYGPELYKSMVLELNARDDRGINVVQTRIKDFAAVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQALHGYHLIWHNALRLTMETFSKVTRFFFICNYI SRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDAEALSTLSSISQGDLCRAITYLQGAARLFGSSISSKDLISVSGAIPQEVTEALYEACKSG DFDLANKEVNNIIAEGYPVSQILAQLFEVVVEADDLSNERKACMCKSLATADKCLIDGADEYLQLLDVASNTMRALCNMPQERYYDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.002G080100 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G057550 [exp]	2.00	0.6511
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	13.41	0.6513
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.014G119600 [exp]	26.45	0.6309
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Potri.008G072300 [exp]	33.31	0.6070
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.018G086300 [exp]	48.24	0.6270	HBT.2
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	53.83	0.6080
AT5G18590			Galactose oxidase/kelch repeat...		Potri.010G022000 [exp]	71.27	0.5991
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	77.29	0.5875
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	155.94	0.5341
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.012G110200 [exp]	165.22	0.5445

Compare expression of checked genes

Potri.002G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.