Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80830 590 / 0 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT1G15960 590 / 0 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT5G67330 325 / 4e-105 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT1G47240 323 / 2e-104 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT2G23150 322 / 7e-104 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT4G18790 311 / 8e-100 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT5G03280 141 / 4e-35 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181000 [exp] 866 / 0 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 861 / 0 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080400 [exp] 845 / 0 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 583 / 0 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.002G121000 [exp] 317 / 7e-102 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050700 [exp] 303 / 1e-96 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050600 [exp] 300 / 1e-95 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.005G180900 [exp] 172 / 6e-51 AT1G80830 118 / 2e-31 natural resistance-associated macrophage protein 1 (.1) Potri.006G127100 [exp] 158 / 6e-41 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018132 [exp] 756 / 0 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 753 / 0 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 593 / 0 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 592 / 0 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10032853 [exp] 325 / 7e-105 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 323 / 7e-104 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10010395 [exp] 321 / 1e-103 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 320 / 2e-103 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10013803 [exp] 145 / 2e-36 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 142 / 2e-35 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01566 [poplar] [flax] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Potri.002G080500.1 pacid=42779310 polypeptide=Potri.002G080500.1.p locus=Potri.002G080500 ID=Potri.002G080500.1.v4.1 annot-version=v4.1 ATGGCAAGCTCACAGCAGGAACAGCAAGCGTGTGAGATTGCTCCAGCATCACGGGGAAACAGCAATCGTATAGCAGCTCTTAACTTGGATGGCCAGTCCC CACCTTGCATTGATGATTATGACCAGCAGAAACCCGGATGGAGAAAGTTCCTCCCCTACGTCGGACCCGGTTTTCTTGTTTCATTAGCTTATCTGGATCC TGGAAACTTGGAAACAGATTTGCAAGCAGGAGCCAACCATGGATACGAGCTGTTATGGGTGATCCTTATTGGTTTGATCTTCGCTCTCATAATCCAATCC CTTGCTGCAAATCTTGGTGTGAGCACCGGCAGACACCTAGCTGAGTTGTGCAAGGCTGAATATCCAAAGTACGTGAGATGGAGCCTGTGGTTGCTAGCAG AGGTAGCTGTCATAGCTGCTGATATACCTGAAGTCATTGGAACAGCCTTTGCGTTAAACATACTATTCCACATCCCCGTATGGGCAGGAGTTCTCATGAC TGGTCTTAGCACTCTCCTGCTTCTTGGTCTCCAAAAATATGGGATCAGGAAACTGGAGCTGCTGATATCAGCGTTGGTGTTTACAATGGCAGCATGTTTC TTTGGTGAACTTAGTTATGTAAAGCCTCCAGCATCTGGTGTGCTGAAAGGCTTGTTTATCCCTAAACTGTCAGGCCAAGGAGCCACTGGTGATGCCATTG CTCTACTCGGTGCCCTTGTCATGCCGCACAACCTCTTTCTTCATTCCGCTCTTGTGCTTTCTAGGAAAGTGCCCAATTCTGTTCGTGGCATCAATGATGC ATGTCGATATTTCCTGATAGAAAGCGGATTTGCACTATTTGTAGCATTTTTAATCAATGTATCGATTATCTCTGTATCGGGTACTGTTTGCTTGGCCAAG AATCTCTCACCTGAAAATGCTGATCAGTGCGGTGATCTCACCCTCAAGGGTGCTTCTTTCTTACTCAAGAATGTGCTGGGAAAGTCAAGTTCGACCATTT ATGCCATTGCGTTATTAGCCTCGGGACAAAGCTCTACAATAACAGGCACTTACGCTGGACAATACATCATGCAGGGTTTCTTGGATTTGAAGATGAGAAA ATGGCTTAGGAACCTAACGACTAGATGCATTGCCATTTTACCAAGTCTCTTTGTCTCAATTATAGGTGGATCATCCGGGGCAAGCCGGTTAATCATCATT GCATCGATGATATTGTCATTTGAGCTCCCATTTGCACTCATCCCACTTCTTAAATTCAGCAGCAGTAACCCCAAGATGGGACCGCACAAGAACTCAATTT ATATAATTGTCATCTCGTGGACTCTGGGATTCATGATCATTGGAATCAATGTGTATTATCTAAGCACGGGATTTGTGGGCTGGCTGACTCATAACAATCT GCCCAAAGTTGGAAATGTGATTATCGGGATCATAGTCTTTCCTTTGATGGCAATATATATTCTTGCTATCATCTACCTAACCTTTAGAAAAGACACTGCT GTGACATACATTGACCCAGTGAAGAATGATCCAAATCTTGAGGCTAACATGGAAAATGGGCAAGGAAAATCTAACCAGGAAATGGCATTCGGTCGGGTAC CTTACAGAGAGGATTTAGCTGATGTCCCACTGCCAGAGTAG
AA sequence Show only first row Show all	>Potri.002G080500.1 pacid=42779310 polypeptide=Potri.002G080500.1.p locus=Potri.002G080500 ID=Potri.002G080500.1.v4.1 annot-version=v4.1 MASSQQEQQACEIAPASRGNSNRIAALNLDGQSPPCIDDYDQQKPGWRKFLPYVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVILIGLIFALIIQS LAANLGVSTGRHLAELCKAEYPKYVRWSLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLMTGLSTLLLLGLQKYGIRKLELLISALVFTMAACF FGELSYVKPPASGVLKGLFIPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFVAFLINVSIISVSGTVCLAK NLSPENADQCGDLTLKGASFLLKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMRKWLRNLTTRCIAILPSLFVSIIGGSSGASRLIII ASMILSFELPFALIPLLKFSSSNPKMGPHKNSIYIIVISWTLGFMIIGINVYYLSTGFVGWLTHNNLPKVGNVIIGIIVFPLMAIYILAIIYLTFRKDTA VTYIDPVKNDPNLEANMENGQGKSNQEMAFGRVPYREDLADVPLPE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080500 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.001G216100 [exp]	1.00	0.9853
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	1.41	0.9749
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	3.46	0.9663
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	4.00	0.9614
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.003G173500 [exp]	4.47	0.9567
AT2G38510			MATE efflux family protein (.1...		Potri.016G134800 [exp]	5.19	0.9572
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G121900 [exp]	6.00	0.9639
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078300 [exp]	6.48	0.9527
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	7.48	0.9619	Pt-CWINV.1
AT2G46495			RING/U-box superfamily protein...		Potri.014G098200 [exp]	8.12	0.9394

Compare expression of checked genes

Potri.002G080500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.