Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21700 679 / 0 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 112 / 5e-26 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 90 / 1e-18 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G34430 87 / 3e-17 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT4G16420 59 / 1e-08 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 55 / 2e-07 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT1G18330 43 / 0.0007 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 42 / 0.0009 MYB Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180800 [exp] 1198 / 0 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 161 / 1e-40 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.015G100400 [exp] 120 / 3e-28 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.004G153300 [exp] 100 / 2e-21 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G004800 [exp] 86 / 2e-17 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.006G017300 [exp] 61 / 2e-09 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 61 / 4e-09 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.016G007600 [exp] 59 / 7e-09 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.012G038300 [exp] 44 / 0.0003 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042734 [exp] 781 / 0 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10029695 [exp] 732 / 0 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10026334 [exp] 148 / 2e-36 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 142 / 1e-34 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10016043 [exp] 139 / 1e-34 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 140 / 2e-34 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 122 / 7e-29 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10023583 [exp] 122 / 3e-28 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10043188 [exp] 119 / 7e-28 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10040472 [exp] 120 / 1e-27 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF04433 [poplar] [flax] SWIRM SWIRM domain CL0123 [poplar] [flax] PF16495 [poplar] [flax] SWIRM-assoc_1 SWIRM-associated region 1
Representative CDS sequence Show only first row Show all	>Potri.002G080600.3 pacid=42779782 polypeptide=Potri.002G080600.3.p locus=Potri.002G080600 ID=Potri.002G080600.3.v4.1 annot-version=v4.1 ATGCCAGCTTCCCCTTCTTTCCCTGCTTCAGATGGAAGGGGCAAATGGAAAAGGCGAAAGCGAGGAGACTCTCAAATCACTCGAAAACCACCAAAGCACC ACCACCAAGAAGAACCTGAAGAACCCGAAGACGACGACGACGCGGTTGAGGCAGACGACCATAACAATAACATCGTCTACAGAGAAGATTCCGAAGACCC GAACCCACATCAGCAACCCAACGGACCCGATCCAAACCCTCAAGAGACCGAGGTTTTAACTGACGGCGGGGTCCGCATATGCGATTTCCCTCCGGTCACT CGGCTTGCTGTGAACCGCCCTCATGCGTCTGTGATGGCGATTGTGGCGGCCGAGAGGTTCAATTTAGCTGGAGAAAGCAGTAATAGAGGCCAATTAACTT TGAATCTGGAGAATGTATCGTACGGGCAGCTGCAGGCGGTGTCTGCTGTGACAGCGGAGAGTGTTGGGAGTGATTTGGAGAGGAGTGATGGAGGGAATTC GGGGTATGTAGTGACGCCGCCGCAGATTATGGATGGAAAGGGTGTCGTGAAGAGGTTTTGGAGTAGATTACATGTGGTTCCGATGCATTCAGATTGGTTT TCACCGCTCTCGGTTAATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCTGGAAAATCTTTAGATCACACACCAGAGAAATACATGGAGTGTAGAA ACCGCATTGTTGCTAAATATATGGAGAATCCAGAGAAGAGGCTCACAGTTTCTGATTGTCAAGGATTGGTAGTCAGTATTGACATTGAAGATTTAACTCG AATTTTTAGATTTCTTGATCATTGGGGAATTATCAACTACTGTGCAGCTCCACCAAGTTGCGAATCCTGGAGTGGGGGGTCCTATTTAAGGGAGGATCCA AATGGTGAGGTTCATGTACCGTCAGCTTCCTTAAAGTCTATTGATAGTTTGATCCAATTTGACAAGCCCAGATGTAGGCTCAAGGCAGCTGATGTTTATT CATCATTTTCATGTCATGGTGATGATTTCTCTGACCTGGACAACAGAATTAGAGAGTGCTTATCTGAAAATTGCTGCAATTGTTGTTCTCAGCCTCTTCC CTCTGTTTTCTACCAGTCACAAAAGGAGGTTGATATACTACTATGCTCTGATTGCTTCCATGAGGGGAGATTTGTGACTGGTCATTCAAGCTTAGATTTT GTTAAGGTAGATTCAACAAAAGATTATGGTGATATAGATGGAGAAAATTGGAGTGATCAGGAAACATTACTTCTCCTTGAGGCAATGGAGATTTACAATG AGAATTGGAATGAAATTGCAGAACATGTTGGAACCAAGTCAAAAGCACAATGCATCCTTCACTTTCTGCGTCTGCCTGTAGAGGATGGCCTGTTGGAAAA TATTGAAGTTCCAAGAATGTCCAAGCCACCCAGTCCATCTAGTAGAGATGATAGCAGAAGACCACACTCAAGTTCAAATGGATCCTGCCTCCGAAGTGCT GATGCTGAAAATAGGCTACCTTTTGCAAATTCTGGCAATCCAGTTATGGCATTGGTTGCTTTTCTGGCCTCTGCTGTTGGACCAAGAGTTGCTGCAGCCT GTGCTCATGCATCTTTGGCAGCATTGTCTGAGGATAACAGGATGGATTCAGAGAGATTACATGGTAGAGAAGGTGGTTTTCATGGAGAAGTTGCAAATTC AATTCAACAAAAAGAAGATGGCCAGCATGGCTCACGGGGTCAAAATGGGGCCGAGGTTGTTCCATTGTCTTCTGAAAAAGTTAAAGCTGCTGCCAAAGCT GGCCTTGCTGCTGCAGCAACAAAGGCTAAACTGTTTGCTGATCATGAAGAGCGGGAAATTCAGAGACTATCTGCCAATATCATAAATCATCAGTTTTTGA TATGGTTACAGTTGAAGAGACTGGAGCTTAAGCTGAAGCAGTTTGCTGAAGTGGAAACCTTTCTAATGAGAGAGTGCGAGCAAGTGGAGAAGACAAGGCA ACGGTTTGCTGCTGAGCGGGTCCGCATGCTATCTACCCGGATAGGACCTGCTGGAGTCACTTCACAAGTGAACCCAGCTGGTGTTGCTCCTTCGATGGTT AACAATAATGTGGGCAACAATAGGCAGCAGGTGATGCCTTCCTCCTCTTCACAACCAAGCATTCCAGGATATGGCAACAGTAATCCAACCCATCCGCACA ACAATCAACAAGTCCATCCTCACATGTCATATTTGCAACGGGGACATCCCCAGCCAATGTTTCCATTAGGGCCGAGGCTGCCCATGGCAGCTATACAGCC ATCCTCGTCCGCTCCATCGAATGTCATGTACAACGCCCCTGGAAATTCACAGCCTAACCTCAATCAAATGCCGAGATCTGTGTCAGGCCCTAGTTCTGGC TTAGGTTGA
AA sequence Show only first row Show all	>Potri.002G080600.3 pacid=42779782 polypeptide=Potri.002G080600.3.p locus=Potri.002G080600 ID=Potri.002G080600.3.v4.1 annot-version=v4.1 MPASPSFPASDGRGKWKRRKRGDSQITRKPPKHHHQEEPEEPEDDDDAVEADDHNNNIVYREDSEDPNPHQQPNGPDPNPQETEVLTDGGVRICDFPPVT RLAVNRPHASVMAIVAAERFNLAGESSNRGQLTLNLENVSYGQLQAVSAVTAESVGSDLERSDGGNSGYVVTPPQIMDGKGVVKRFWSRLHVVPMHSDWF SPLSVNRLERQVVPHFFSGKSLDHTPEKYMECRNRIVAKYMENPEKRLTVSDCQGLVVSIDIEDLTRIFRFLDHWGIINYCAAPPSCESWSGGSYLREDP NGEVHVPSASLKSIDSLIQFDKPRCRLKAADVYSSFSCHGDDFSDLDNRIRECLSENCCNCCSQPLPSVFYQSQKEVDILLCSDCFHEGRFVTGHSSLDF VKVDSTKDYGDIDGENWSDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGLLENIEVPRMSKPPSPSSRDDSRRPHSSSNGSCLRSA DAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLAALSEDNRMDSERLHGREGGFHGEVANSIQQKEDGQHGSRGQNGAEVVPLSSEKVKAAAKA GLAAAATKAKLFADHEEREIQRLSANIINHQFLIWLQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERVRMLSTRIGPAGVTSQVNPAGVAPSMV NNNVGNNRQQVMPSSSSQPSIPGYGNSNPTHPHNNQQVHPHMSYLQRGHPQPMFPLGPRLPMAAIQPSSSAPSNVMYNAPGNSQPNLNQMPRSVSGPSSG LG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.002G080600 [exp]	0	1
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	1.00	0.9269
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	2.00	0.9242
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.014G078500 [exp]	4.24	0.9012
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	5.19	0.9131
AT3G22270			Topoisomerase II-associated pr...		Potri.006G021900 [exp]	8.66	0.8872
AT4G17080			Histone H3 K4-specific methylt...		Potri.002G140000 [exp]	13.03	0.8853
					Potri.013G048150 [exp]	13.22	0.8737
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	13.96	0.8913
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	14.83	0.8961
AT1G75230			DNA glycosylase superfamily pr...		Potri.005G227700 [exp]	15.09	0.8840

Compare expression of checked genes

Potri.002G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.