Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 468 / 9e-162 GRAS GRAS family transcription factor (.1) AT5G41920 179 / 4e-51 GRAS GRAS family transcription factor (.1) AT5G17490 179 / 7e-50 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G54220 178 / 6e-49 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 173 / 9e-48 GRAS RGL2 RGA-like 2 (.1) AT5G66770 169 / 4e-46 GRAS GRAS family transcription factor (.1) AT1G66350 168 / 4e-46 GRAS RGL1 RGA-like 1 (.1) AT2G01570 160 / 6e-43 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G50650 160 / 6e-43 GRAS SCL7 GRAS family transcription factor (.1) AT5G48150 156 / 6e-42 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175300 [exp] 849 / 0 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.001G326000 [exp] 197 / 1e-55 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.019G007100 [exp] 188 / 5e-54 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.005G190300 [exp] 185 / 1e-52 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.005G123800 [exp] 181 / 5e-50 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.012G020200 [exp] 176 / 9e-50 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 176 / 1e-49 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G095100 [exp] 176 / 8e-49 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.006G114200 [exp] 180 / 9e-49 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008316 [exp] 602 / 0 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 553 / 0 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10041540 [exp] 215 / 6e-62 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 213 / 2e-60 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10020857 [exp] 187 / 2e-53 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10016496 [exp] 186 / 2e-51 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033517 [exp] 181 / 6e-51 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10040734 [exp] 184 / 2e-50 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10024014 [exp] 172 / 7e-47 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10017626 [exp] 171 / 2e-46 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.002G086100.1 pacid=42777216 polypeptide=Potri.002G086100.1.p locus=Potri.002G086100 ID=Potri.002G086100.1.v4.1 annot-version=v4.1 ATGGCCATGGCTATAGATGGAACCAAATTTGAGCTCGACTTTTCCGGCTATAGCAGCACAACCACCACAGCCACCACAACCCCCACCATTTCCACCGAAA ATGACCATGACCATGCCTGCAATTGGAACGACTGGTCTCCAATGGTCGACTGGGAGGCCTTATCTGGCCCCCACGATGACTTTCAAGACCTCATCGATTC CATGATGGATGATGGAGCATTAATGAATCAAAGTAGTCGCTTGACACCAGACACGAGCAACTCCATGTCCACAAGTGACACTGTGTTTGTCGATGAAGAA ACAAGCTGCAGCAACGATTTCAAGGGTTTGCGGTTAGTTCATCTATTGATAGCTGCGGCCGAGGCACTTACTGGTCTAAACAAGAACAGTGATCTGGCTC GGGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCCAAATGATGGAACCAACATGGAAAGATTAGCTGCTTATTTCACTGATGCCTTGCAAGGTTTACT AGAAGGCACTGGTGGTATTCACAGCAATAAACATCATTCGGTAACCAACAATGGGCCTTATCATCATCACCATCGCGACGATCCTCAACAACATCGCCAT CAAAATGATGCTCTTGCAGCCTTTCAGCTATTGCAAGACATGTCGCCTTATGTCAAGTTTGGGCATTTCACTGCCAATCAGGCAATTTTGGAAGCTGTAG CTGAAGATAGGAGGATTCATATTGTGGATTATGATATCATGGAAGGGATCCAATGGGCTTCTTTGATGCAAGCTTTAGTCTCCAGGAAGGATGGCCCACC AACCCCACACCTTAAGATCACAGCCATGTCAAGGGGTGGCAGTAGTCGGAGGTCTATTGGGACCGTCCAAGAAACGGGACGTCGTTTAGTGGCCTTTGCT GCATCAATCGGTCAACCCTTTTCTTTCCATCAGTGCAGGTTAGACTCCGATGAAACATTTAGACCATCTGCTTTGAAGTTAGTTAAAGGGGAGGCATTGG TTATGAATTGTATGTTACACCTTCCTCATTTTAGTTACCGGGCACCCGATTCTGTTGCTTCGTTTTTATCCGGAGCCAAGACATTGAACCCGAGATTAAT AACCATGGTGGAGGAGGAGGTGGGGCCCATTGGGGATGGAGGGTTTGTGGGTCGGTTCATGGACTCATTGCACCACTACTCTGCCTTTTATGATTCGATG GAGGCGGGTTTTCCGATGCAGGGTCGGGCTCGGGCTTTAGTTGAAAGAGTGATTTTGGGGCCCAGGATTTCCGGGTCATTGGCTCGGATCTATAGGGCAC GTGGAGAAGAGGTTTGCCCATGGTGGGAGTGGTTGGCTGCGCGGGGGTTTCAGCCAGTTAAAGTAAGCTTTGCCAATAATTGTCAAGCAAAGCTTTTGCT GGGAGTTTTTAATGATGGGTACAGGGTGGAGGAATTGGCTAGCAACAGGCTCGTCCTTGGTTGGAAATCTAGACGTTTACTATCAGCCTCTATTTGGACC TCTCCTTCTGACCCTGATTTGTAA
AA sequence Show only first row Show all	>Potri.002G086100.1 pacid=42777216 polypeptide=Potri.002G086100.1.p locus=Potri.002G086100 ID=Potri.002G086100.1.v4.1 annot-version=v4.1 MAMAIDGTKFELDFSGYSSTTTTATTTPTISTENDHDHACNWNDWSPMVDWEALSGPHDDFQDLIDSMMDDGALMNQSSRLTPDTSNSMSTSDTVFVDEE TSCSNDFKGLRLVHLLIAAAEALTGLNKNSDLARVILVRLKELVSPNDGTNMERLAAYFTDALQGLLEGTGGIHSNKHHSVTNNGPYHHHHRDDPQQHRH QNDALAAFQLLQDMSPYVKFGHFTANQAILEAVAEDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPTPHLKITAMSRGGSSRRSIGTVQETGRRLVAFA ASIGQPFSFHQCRLDSDETFRPSALKLVKGEALVMNCMLHLPHFSYRAPDSVASFLSGAKTLNPRLITMVEEEVGPIGDGGFVGRFMDSLHHYSAFYDSM EAGFPMQGRARALVERVILGPRISGSLARIYRARGEEVCPWWEWLAARGFQPVKVSFANNCQAKLLLGVFNDGYRVEELASNRLVLGWKSRRLLSASIWT SPSDPDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08250	GRAS		GRAS family transcription fact...		Potri.002G086100 [exp]	0	1
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	8.24	0.9283
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.018G011400 [exp]	10.58	0.8669
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	12.36	0.9159
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	12.72	0.9219	PRX1.13
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	20.19	0.9124
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	24.91	0.9002
					Potri.013G145900 [exp]	25.65	0.9014
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	28.89	0.9111
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029600 [exp]	30.16	0.8982
AT4G22030			F-box family protein with a do...		Potri.004G009000 [exp]	31.24	0.8892

Compare expression of checked genes

Potri.002G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.