Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AST56.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77990 826 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT5G10180 806 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT4G08620 634 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 627 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 610 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G51895 596 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT3G15990 538 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT4G02700 536 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 521 / 3e-178 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G19600 463 / 1e-155 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088700 [exp] 874 / 0 AT5G10180 837 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.005G079000 [exp] 849 / 0 AT5G10180 828 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.005G167300 [exp] 672 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 636 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 583 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 571 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 562 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 562 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.003G056200 [exp] 545 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016806 [exp] 813 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10022502 [exp] 725 / 0 AT5G10180 798 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10029616 [exp] 641 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10041111 [exp] 633 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 625 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 589 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 572 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10035897 [exp] 520 / 4e-177 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 519 / 1e-176 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 513 / 6e-174 AT1G23090 953 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.002G092400.1 pacid=42777679 polypeptide=Potri.002G092400.1.p locus=Potri.002G092400 ID=Potri.002G092400.1.v4.1 annot-version=v4.1 ATGGGTTCTCAGCCAATTCAAACCTTCAGCGTGGAAGAGCGGCGGCGGCGGCATCTTAACATGGAAGATGCTACTAGTCAGCTTGAGATGGCACAGTGGG TGCTGAATTCTCCTGATCCACCAGGCCTATTGCAAGAGCTCGGTAGTTCAGTGAGAGAAATTATTTTCCCTCATGGAAAAAAGCACACTTCATCAACTGC GAGGCGAAAACAACAAAGCCGTGCCATGGAATTCTTGCAAGGGGTATTTCCAATCCTGAGATGGGGTAGGGATTACAAAGCTTCCATGTTTAAAAACGAC CTAATGGCAGGTTTAACTCTTGCGAGCCTTAGCATTCCTCAGAGTATTGGATATGCTAATTTAGCAAAACTTGATCCTCAGTATGGCCTGTATACTAGTG TTATCCCACCTCTGATTTATGCTATAATGGGAAGTTCAAGAGAGATAGCCATCGGCCCTGTAGCTGTGGTATCTATGCTGCTCTCCTCCATGATTGGGGA GATACAAGATCCTTTAGCTGATCCAGTTGCCTATAGAAACTTTGTTTTTACTGTTACCTTGTTTGCTGGGACCTTCCAAGCCATATTTGGACTGTTTAGG TTGGGTTTTCTTGTGGACTTCCTTTCTCATGCATCCATTGTTGGATTTATGGGGGGTGCTGCCATTGTCATTGGTCTTCAGCAACTGAAAGGGCTGCTTG GAATCAGCCATTTCACCACCAAAACTGATGTGGTTTCAGTTCTTCACTCTGCTTTTACATCAATTGACCATCCATGGAGCCCATTGAATTTCGTCCTCGG TTGTTCATTCCTAATTTTTCTCCTAATTGCCAGGTTTATTGGAAGGAGAAACAAGAAGCTCTTCTGGTTCCCAGCTATTGCTCCTCTCGTGTCAGTAATA TTGTCCACTTTAATTGTGTTTTTGACAAAAGCTGACAAGCATGGAGTTAAGATTGTAAGACACATCAAAGGAGGCCTGAACCGGAGTTCAGTCCATGACT TACAACTCAGTGGCCCACAAGTGGGGCAAGCAGCCAAAATTGGGCTCATTTCTGCCATTGTTGCTCTTACCGAAGCCATTGCTGTTGGCCGGTCTTTTGC TTCCATAAAGGGCTACCACATTGATGGGAACAAGGAAATGCTTGCCTTAGGCTTCATGAACATTGCAGGATCTTTATCTTCTTGCTATGTTGCCACTGGT TCATTCTCAAGAACTGCTGTGAATTTCAGCGCAGGATGTCAAACATTGGTGTCCAATATAGTAATGTCTATTACAGTACTTGTCTCACTAGAGGTGTTTA CTAGGCTCTTGTACTACACTCCCACTGCGATCCTTGCTTCAATCATTCTGTCAGCTCTTCCTGGACTCATTGACATACGGGGAGCTTATTATATCTGGAA AGTTGATAAACTAGACTTCATCGCTTGCATTGGTGCTTTCTTTGGTGTCTTGTTTGCGTCAGTGGAGATTGGTCTTCTAGCTGCGGTCACAATCTCATTT GCAAGGATATTGCTGAATGCCATTAGACCAGGCATAGAAGCACTTGGGAGACTACCAAGAGCTGATGTGTACTGTGATATGAACCAATATCCCATGGCCG TTAAAACTCCCGGCATTTTAGCAGTCCGCATCAACTCTGCCTTGCTTTGCTTTGCGAATGCCAATTTTATAAGAGAAAGGATATTAAGGTGGGTGACAGA AGAAGTGAATGAAATCAAAGAAAGCACCGAGGGAGGGATTCAAGCAGTAATTCTTGACATGTCCAATGTAATGAACATTGACACGGCAGGAATTCTTGCG CTAGAAGAGCTGCACAAGGAGTTGCTCATTCATGAAGCACAATTAGCTATAGCCAACCCCAAGTGGCAAGTGATTCACAAGCTAAGGTTGGCCAAATTTA TAGACAGAATTGGAAGAGGGTGGATTTTCCTCACCGTCAGTGAAGCCGTAGATGCATGTGTTAGCTCTAAATTAACTGCCCTCGCAAACTGTTGA
AA sequence Show only first row Show all	>Potri.002G092400.1 pacid=42777679 polypeptide=Potri.002G092400.1.p locus=Potri.002G092400 ID=Potri.002G092400.1.v4.1 annot-version=v4.1 MGSQPIQTFSVEERRRRHLNMEDATSQLEMAQWVLNSPDPPGLLQELGSSVREIIFPHGKKHTSSTARRKQQSRAMEFLQGVFPILRWGRDYKASMFKND LMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYAIMGSSREIAIGPVAVVSMLLSSMIGEIQDPLADPVAYRNFVFTVTLFAGTFQAIFGLFR LGFLVDFLSHASIVGFMGGAAIVIGLQQLKGLLGISHFTTKTDVVSVLHSAFTSIDHPWSPLNFVLGCSFLIFLLIARFIGRRNKKLFWFPAIAPLVSVI LSTLIVFLTKADKHGVKIVRHIKGGLNRSSVHDLQLSGPQVGQAAKIGLISAIVALTEAIAVGRSFASIKGYHIDGNKEMLALGFMNIAGSLSSCYVATG SFSRTAVNFSAGCQTLVSNIVMSITVLVSLEVFTRLLYYTPTAILASIILSALPGLIDIRGAYYIWKVDKLDFIACIGAFFGVLFASVEIGLLAAVTISF ARILLNAIRPGIEALGRLPRADVYCDMNQYPMAVKTPGILAVRINSALLCFANANFIRERILRWVTEEVNEIKESTEGGIQAVILDMSNVMNIDTAGILA LEELHKELLIHEAQLAIANPKWQVIHKLRLAKFIDRIGRGWIFLTVSEAVDACVSSKLTALANC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77990		SULTR2;2, AST56	SULPHATE TRANSPORTER 2;2, STAS...		Potri.002G092400 [exp]	0	1	AST56.1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073566 [exp]	1.73	0.9312
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	2.23	0.9273
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	11.95	0.9339
AT2G36430			Plant protein of unknown funct...		Potri.003G181800 [exp]	15.23	0.9335
					Potri.008G169450 [exp]	20.24	0.9202
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G018200 [exp]	21.35	0.9282
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020432 [exp]	28.63	0.8740
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	40.12	0.9080
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050701 [exp]	48.37	0.9215
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	55.53	0.8644

Compare expression of checked genes

Potri.002G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.