Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72230 129 / 3e-37 Cupredoxin superfamily protein (.1) AT1G22480 117 / 7e-33 Cupredoxin superfamily protein (.1) AT2G32300 99 / 1e-24 UCC1 uclacyanin 1 (.1) AT5G07475 92 / 7e-23 Cupredoxin superfamily protein (.1) AT3G60270 91 / 2e-22 Cupredoxin superfamily protein (.1) AT3G27200 89 / 6e-22 Cupredoxin superfamily protein (.1) AT2G26720 86 / 3e-20 Cupredoxin superfamily protein (.1) AT2G44790 86 / 3e-20 UCC2 uclacyanin 2 (.1) AT2G31050 86 / 4e-20 Cupredoxin superfamily protein (.1) AT3G60280 84 / 2e-19 UCC3 uclacyanin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101300 [exp] 301 / 7e-105 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 98 / 7e-25 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 97 / 2e-24 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 96 / 2e-24 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 96 / 2e-24 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 96 / 3e-24 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 92 / 3e-23 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 92 / 6e-23 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 91 / 2e-22 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020944 [exp] 161 / 1e-49 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 153 / 2e-46 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 117 / 2e-32 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 112 / 2e-30 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 92 / 1e-22 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 91 / 5e-22 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10007025 [exp] 89 / 1e-21 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10006682 [exp] 87 / 7e-21 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10006657 [exp] 89 / 3e-20 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10022350 [exp] 85 / 3e-20 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G101200.1 pacid=42777378 polypeptide=Potri.002G101200.1.p locus=Potri.002G101200 ID=Potri.002G101200.1.v4.1 annot-version=v4.1 ATGGAGTATGGGTTAAGTCATCTTCATGAAATTAGTCCCTTTCACATTCTAAGAGCTTTGTGGAATCAAGTGGACCTAATTATACTCACTCCATATTTAC TCATTCCACTATATAACACCCCCAACGACGATCCTAAAAGCAACCCAAATACCTTCTTCTCTTCTCTTCTTTTCTCCCGGAAAATGGCCGGTTTAATTTC AAGATCAGTTCCTTGTGCAATCCTAGTAGTCTTGTGCACGGTGGTGCCCATTTTGGCTAAAGATCACACTGTAGGAGATAGTTCAGGCTGGGCAATTGGT ATGGATTATAGCACCTGGACTAGTGGCAAGACCTTTTCAGTTGGCGACAGCCTTGTGTTTAACTACGGAGGAGGCCACACGGTAGATGAAGTGAGAGCCA GTGACTACAGCACATGCACTACAGGCAATGCAATCACTTCAGATAGCAGTGGTGCTACCACAATAGCCCTCAAGACTGCCGGAACTCATTATTTCATTTG TGGTGTTCCTGGCCACTGTGGGAGTGGCATGAAGGTTGCAGTCACTGTTGCAGCAGCAGGATCGAGCACAAGTCCCTCCTCCGGAACTCCATCTTCTGAT GGCACTACCACTTCTCCGGCCGGTAGTAACGTCACCAATTACAAGCCTTCATCCAACAACGTACCCGATTCATCCTTAGGGATCAATATTTCCCCATTTG TGGCTTTAGCCGGTACTTGTGTCGCCGTTTTTGTGATGGTTTTCTCATGA
AA sequence Show only first row Show all	>Potri.002G101200.1 pacid=42777378 polypeptide=Potri.002G101200.1.p locus=Potri.002G101200 ID=Potri.002G101200.1.v4.1 annot-version=v4.1 MEYGLSHLHEISPFHILRALWNQVDLIILTPYLLIPLYNTPNDDPKSNPNTFFSSLLFSRKMAGLISRSVPCAILVVLCTVVPILAKDHTVGDSSGWAIG MDYSTWTSGKTFSVGDSLVFNYGGGHTVDEVRASDYSTCTTGNAITSDSSGATTIALKTAGTHYFICGVPGHCGSGMKVAVTVAAAGSSTSPSSGTPSSD GTTTSPAGSNVTNYKPSSNNVPDSSLGINISPFVALAGTCVAVFVMVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72230			Cupredoxin superfamily protein...		Potri.002G101200 [exp]	0	1
AT1G72230			Cupredoxin superfamily protein...		Potri.002G101300 [exp]	1.00	0.9596
AT5G55970			RING/U-box superfamily protein...		Potri.011G094800 [exp]	1.41	0.9358
					Potri.005G114500 [exp]	3.00	0.9320
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	4.24	0.8820
AT2G40370		LAC5	laccase 5 (.1)		Potri.010G183600 [exp]	4.47	0.8818
AT2G40370		LAC5	laccase 5 (.1)		Potri.008G073700 [exp]	7.21	0.8766	GLAC90.1
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	12.04	0.8966	Pt-CESA2.1
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	12.32	0.9155
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	13.26	0.8723
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	14.96	0.8525

Compare expression of checked genes

Potri.002G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.