Plant FIBer expression Database

Potri.002G106500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09710 227 / 1e-65 MYB Homeodomain-like superfamily protein (.1.2)
AT1G58220 220 / 2e-61 MYB Homeodomain-like superfamily protein (.1)
AT3G16350 44 / 0.0004 MYB Homeodomain-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G228700
[exp]
45 / 0.0002 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Potri.001G224500
[exp]
43 / 0.0007 AT3G11440 298 / 1e-94 myb domain protein 65 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042871
[exp]
284 / 7e-88 AT1G58220 213 / 3e-60 Homeodomain-like superfamily protein (.1)
Lus10028172
[exp]
284 / 1e-87 AT1G58220 216 / 2e-61 Homeodomain-like superfamily protein (.1)
Lus10042209
[exp]
43 / 0.0009 AT1G15720 70 / 1e-12 TRF-like 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00249 Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence
>Potri.002G106500.1 pacid=42778020 polypeptide=Potri.002G106500.1.p locus=Potri.002G106500 ID=Potri.002G106500.1.v4.1 annot-version=v4.1
ATGATTGAGAAATCCAAGAAGAACAAAAAGGGAGTGATCAGTGAAGAAGATGTTTCCACTCTCTTACAAAGGTATACAGCGACGACACTCCTAGCGTTGC
TGCAAGAAGTGGCTCAATTTGATGGAGCGAAAATTGATTGGAATGCGTTAGTTAAAAAGACCAGCACTGGAATTTCTAATGCAAGGGAGTATCAAATGCT
ATGGAGACATTTAGCATATCGACACGTTTTACCTGAGAAATTCGATGATGGAGCTCACCCTCTGGATGATGATGATAGTGATTTAGAATCTGAACTGGAA
GCTTTTCCTAGTGTTACTAGTGAAGCTTCGACCGAGGCTGCAGCTTGTGTTAAGGTATTAATAGCATCTGGTTTACCAAGTGATTCAACTCACCCAAACA
ACACAACAGTTGAGGCTCCCTTAACTATAAACATACCTAATGGCCGGTCGCTTAGAGCTACATCAGAAAATTCACAATCTGATGTGATGCGGGGGGTGAA
CATTAGAGTTCCAGTTTCTGTGCAGAAACTGTCCCTGCCTGCAGTGATGTCTTGTCCTGCTTCTGAAGTATATGATGCAAATGGATCAGGTAGTGGCACA
TTTCCTCCAAGAAGGAAAAGGAAACCCTGGTCAGAAGCTGAGGACATGGAACTGATTGCTGCTGTGCAAAAATTGGGCGAGGGGAATTGGGCAAGCATTG
TAAGAGGTGAATTCAAGGGTGATAGAACTGCTTCCCAGCTGTCTCAGAGGTGGGCCATTATTCGGAAGCGGCACGGGAACTTGAATGTGGGAACCGTTTC
CAGTGCCCCTCAACTCTCTGAGACACAGCGTGCAGCACGCGATGCAGTGAAAATGGCCCTCGATCCTCATCCAGCAGCCAAAAGTTTAATTGCAAGTTCT
GCTGGGACAACTTCTACCAAAACCCCCAATAATTGTGCCTCTCCTACCATCACTGCAGAAGCTTCTCCTGCCCAACATCAATCTCAACAACGTACCATGA
TGACAAAATCATCTTCAATATGGCCAGTGGGACCTGCAGCAAAATCTCAAGTAATGTTGGCAAAAGCATCAGAAAAATCTATTCTGAGTTCTGATCCTGT
GAGAGCTGCTGCAGTTGCTGCTGGGGCTCGCATTGCTACCCAATCAGATGCTGCTTCACTGTTAAAGGCTGCTCAGGCAAAGAATGCTGTCCATATCATG
CCCACAGGCAGTTCTTCAATCAAATCATCCATGACTGGTGGTATTTCTACGCACTTAGATGTCAATCCCAATACTCGATTTATCTCCAGTGGCATGGCAA
CTGCACCAACTACCACACGTCCACCTGCAAGTGGTCCATGCCCTGGTTTGCCCAAAGCTACTTCACCACCCCCTCAGATGAAAGCTTCTTCATCAACAGC
TCAGCATACACAATCCACCCCTGTCACATCATTCAATGCGCAATCTGAACAGACTAATTCTGTTTTGGCCAAAGCCACTGTACTGCCACCTCAGATGAAA
GCTTCTTCAATGACAACTCAGAATACACTATCCACCCCTATCACATCGAGTACGCCATCTGAACAAACTAATGCTGAAAGTTCGCCAAAGCAAGGCATTG
TAACCATTAAGGATACAAAAGCTTTTGGGTCGCAAGAAGTGGCAAATGGCCAAGTTCAAAGGGATGGAGCTCATGTCTCAAGTGAGCATGTTCAAGAAGT
TAAAGCAGCTTTGACAAACCAAGAAGCAGAGTTGAAAAGTCAAGTAGCTGCTTTGGAGAGTTCTAATGGTTCACCAAAATTGATAATGAATGAAAGTGGC
CTGGTAAATGTCACTGGCAACCAGGTCGACGGAAGTCAAAATGCAGATGATAATAAGATGACTTGTTCACCTATCAAGGAAGCTGAAAATCAATCTGCAG
TTCAGGAGAATGATGAGAATCAAAGTGTAAGTGAGAGGCAAGCAGATTTGCCAAGCTCAGTAAGCAATGAATCCTGCATAAAAGTGGATAGTATAAGCAA
AACAGAAGCCAGCGATGGAATGATGGACGGATAG
AA sequence
>Potri.002G106500.1 pacid=42778020 polypeptide=Potri.002G106500.1.p locus=Potri.002G106500 ID=Potri.002G106500.1.v4.1 annot-version=v4.1
MIEKSKKNKKGVISEEDVSTLLQRYTATTLLALLQEVAQFDGAKIDWNALVKKTSTGISNAREYQMLWRHLAYRHVLPEKFDDGAHPLDDDDSDLESELE
AFPSVTSEASTEAAACVKVLIASGLPSDSTHPNNTTVEAPLTINIPNGRSLRATSENSQSDVMRGVNIRVPVSVQKLSLPAVMSCPASEVYDANGSGSGT
FPPRRKRKPWSEAEDMELIAAVQKLGEGNWASIVRGEFKGDRTASQLSQRWAIIRKRHGNLNVGTVSSAPQLSETQRAARDAVKMALDPHPAAKSLIASS
AGTTSTKTPNNCASPTITAEASPAQHQSQQRTMMTKSSSIWPVGPAAKSQVMLAKASEKSILSSDPVRAAAVAAGARIATQSDAASLLKAAQAKNAVHIM
PTGSSSIKSSMTGGISTHLDVNPNTRFISSGMATAPTTTRPPASGPCPGLPKATSPPPQMKASSSTAQHTQSTPVTSFNAQSEQTNSVLAKATVLPPQMK
ASSMTTQNTLSTPITSSTPSEQTNAESSPKQGIVTIKDTKAFGSQEVANGQVQRDGAHVSSEHVQEVKAALTNQEAELKSQVAALESSNGSPKLIMNESG
LVNVTGNQVDGSQNADDNKMTCSPIKEAENQSAVQENDENQSVSERQADLPSSVSNESCIKVDSISKTEASDGMMDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09710 MYB Homeodomain-like superfamily p... Potri.002G106500
[exp]
0 1
AT1G48110 ECT7 evolutionarily conserved C-ter... Potri.010G152300
[exp]
1.73 0.9290
AT1G55000 peptidoglycan-binding LysM dom... Potri.013G021600
[exp]
2.82 0.9357
AT3G10070 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, ... Potri.006G083500
[exp]
4.00 0.9209 Pt-TAFII58.1
AT1G50620 RING/FYVE/PHD zinc finger supe... Potri.001G358900
[exp]
4.12 0.8970
AT4G10790 UBX domain-containing protein ... Potri.001G085600
[exp]
4.47 0.9259
AT3G10480 NAC ANAC050 NAC domain containing protein ... Potri.010G229700
[exp]
5.74 0.9076
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041600
[exp]
5.91 0.9254
Potri.017G152420
[exp]
6.00 0.9181
Potri.018G105150
[exp]
7.07 0.8702
AT1G79090 unknown protein Potri.001G457800
[exp]
7.34 0.8682

Potri.002G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.