Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 516 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 489 / 2e-171 Transmembrane amino acid transporter family protein (.1) AT3G56200 360 / 3e-121 Transmembrane amino acid transporter family protein (.1) AT2G40420 348 / 3e-116 Transmembrane amino acid transporter family protein (.1) AT1G80510 317 / 2e-103 Transmembrane amino acid transporter family protein (.1) AT2G41190 71 / 7e-13 Transmembrane amino acid transporter family protein (.1) AT4G38250 68 / 5e-12 Transmembrane amino acid transporter family protein (.1) AT2G42005 67 / 7e-12 Transmembrane amino acid transporter family protein (.1) AT5G65990 43 / 0.0004 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 553 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 538 / 0 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 397 / 2e-135 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 306 / 4e-99 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 300 / 8e-97 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 293 / 2e-96 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 72 / 8e-15 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 66 / 3e-11 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 63 / 2e-10 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007716 [exp] 673 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 667 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10031964 [exp] 540 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 534 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 533 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 524 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 486 / 8e-171 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10042864 [exp] 387 / 2e-131 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 382 / 2e-129 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003054 [exp] 339 / 3e-112 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.002G114300.1 pacid=42777019 polypeptide=Potri.002G114300.1.p locus=Potri.002G114300 ID=Potri.002G114300.1.v4.1 annot-version=v4.1 ATGTCCTCAAACGACATAAAATACCGGAGGAGTCCACGCATATCACACCTCCCACAAAAACACGACGATTACGAGCCTCTCGAGGTCGGCTTCAATGGAG CATCCTTCTCCGGCGCCGTTTTTAACCTCTCAACAACGATTGTCGGTGCCGGAATCATGGCTTTGCCGTCCACGGTCAAGCAATTGGGGCTAATTCCAGG TATTATTATGATTCTAATGGGAGCTGCGTTAACAGAAACTTCAATTGATATGATATTGAGATTCGGCCGAGCTTCTAAAACCGCCACGTACTCTGGCGTT GTTGCCGATTCGTTTGGTGGTTTTTGGCGGACTCTCCTTCAGATCTGCATTGTTATTAATAATCTGGGCATGCTTATTGTGTACATGATTATTATTGGAG ATGTGCTATCCGGGACGTGGTCAGATGGGGTGCGGCATTCTGGTGTTATGGAAGAATGGTTTGATGAACATTGGTGGACTACACGTTGCTCCTTGTTGCT GTTCACCACGGTCTTTGTTTTTGCTCCTCTCATCTCATTCAAGCGTGTTGATTCATTAAGATACACATCAGCGTTGTCGGTGGGTTTGGCCGTTGTATTT GTTGCCATCACTGCAGGAGTGGCAGTTGTTAAACTAATTGAAGGAACCATTGGAATGCCACGTTTGATGCCTGAAGTAGTTGATCAGACATCATTTTGGA AACTTTTCACTACGGTACCTATTATAGTAACAGCTTATATCTGCCACCACAATGTTCACCCCATAGAGAATGAACTAAAAGACCACACCCACATGAAGTC AATAGTTCGGACATCCCTGACACTATGCTCGTCGGTCTATATTGCTACCAGTTTCTTTGGAGTTCTTCTTTTTGGTGATAAAACACTGGATGATGTCCTT GCCAATTTTGATGGCGATCTTGGTGTTCCATATAGCTCACTGCTTGATGATGTGGTCAGGGTCAGCTATGGTGTCCACCTGATGCTTGTCTTCCCTATTG TGTTCTTCTCCCTTCGCCTCAACCTGGATGAGCTTCTGTTCCCGTTTGCCACCCCCATTGCATATGACAATCGGAGATTCTTCTTAATAACTTTAGCTCT CATGGGATTTATCTTTCTGGGAGCCAATTTTGTGCCTAACATCTGGGATGCCTTCCAGTTCACTGGTGCGACAGCTGCCATCGCTGTTGGTTTTATTTTC CCAGCTGCCATTGCTCTGAGGGACATGCATGGAATTGCCACAAAGAATGACAGACGAGCATCGTGGGTGCTGATATTATTGGCTGTCTCATCAAGTACAG CAGCCATCTGTAGTGATATTTACAGCATTTTCACAAGTGACAGTGGAATTAAAAGCTGA
AA sequence Show only first row Show all	>Potri.002G114300.1 pacid=42777019 polypeptide=Potri.002G114300.1.p locus=Potri.002G114300 ID=Potri.002G114300.1.v4.1 annot-version=v4.1 MSSNDIKYRRSPRISHLPQKHDDYEPLEVGFNGASFSGAVFNLSTTIVGAGIMALPSTVKQLGLIPGIIMILMGAALTETSIDMILRFGRASKTATYSGV VADSFGGFWRTLLQICIVINNLGMLIVYMIIIGDVLSGTWSDGVRHSGVMEEWFDEHWWTTRCSLLLFTTVFVFAPLISFKRVDSLRYTSALSVGLAVVF VAITAGVAVVKLIEGTIGMPRLMPEVVDQTSFWKLFTTVPIIVTAYICHHNVHPIENELKDHTHMKSIVRTSLTLCSSVYIATSFFGVLLFGDKTLDDVL ANFDGDLGVPYSSLLDDVVRVSYGVHLMLVFPIVFFSLRLNLDELLFPFATPIAYDNRRFFLITLALMGFIFLGANFVPNIWDAFQFTGATAAIAVGFIF PAAIALRDMHGIATKNDRRASWVLILLAVSSSTAAICSDIYSIFTSDSGIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30390			Transmembrane amino acid trans...		Potri.002G114300 [exp]	0	1
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	11.22	0.9266
					Potri.013G071200 [exp]	20.85	0.9433
AT5G03420			5'-AMP-activated protein kinas...		Potri.006G123300 [exp]	25.98	0.9402
AT5G05800			unknown protein		Potri.007G118701 [exp]	27.29	0.9425
					Potri.006G128300 [exp]	32.29	0.9413
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.003G081066 [exp]	33.70	0.9407
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.008G140800 [exp]	37.09	0.8908
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.014G056300 [exp]	39.11	0.9375
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	42.66	0.9378
					Potri.006G160950 [exp]	44.73	0.9302

Compare expression of checked genes

Potri.002G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.