Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 180 / 2e-55 MYB ATMYB73 myb domain protein 73 (.1) AT2G23290 176 / 3e-54 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 176 / 5e-54 MYB ATMYB77 myb domain protein 77 (.1) AT5G67300 169 / 1e-51 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G55730 159 / 2e-46 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 158 / 2e-46 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 144 / 2e-41 MYB ATMYB25 myb domain protein 25 (.1) AT4G33450 133 / 4e-38 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 132 / 5e-37 MYB ATMYB56 myb domain protein 56 (.1) AT1G17950 129 / 1e-36 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035100 [exp] 362 / 5e-128 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.007G048900 [exp] 182 / 3e-56 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 182 / 4e-56 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 178 / 4e-55 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.008G070900 [exp] 174 / 5e-54 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.009G096000 [exp] 173 / 1e-53 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.014G022500 [exp] 174 / 4e-53 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.001G300200 [exp] 168 / 8e-52 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.010G195000 [exp] 159 / 2e-46 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021762 [exp] 247 / 3e-82 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10032764 [exp] 237 / 2e-78 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10014103 [exp] 186 / 1e-58 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10040940 [exp] 184 / 2e-58 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 182 / 2e-57 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10028979 [exp] 179 / 4e-56 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10010238 [exp] 176 / 4e-54 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10030336 [exp] 177 / 5e-54 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10010260 [exp] 177 / 5e-54 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10010055 [exp] 175 / 9e-54 AT4G37260 259 / 2e-85 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G128900.1 pacid=42779032 polypeptide=Potri.002G128900.1.p locus=Potri.002G128900 ID=Potri.002G128900.1.v4.1 annot-version=v4.1 ATGGAAACAATGAACATGTGCTCTACTTCTTCTTCAGATTCTTCCGCTTCGGAGTCTTCTTTCAATGACAATAAAACACCAAGAAGTACCGATAAATCTG CCAGAATTAAAGGTCCATGGAGTTCAGAGGAAGACATGATTTTGACTGGGCTTGTTGAGCGACATGGACCAAAAAACTGGTCCTTGATAAGCCGTTACAT AAAGGGTAGGTCTGGGAAATCATGCAGGCTCAGGTGGTGCAATCAGTTAAGCCCAAATGTGGAGCACCGTCCATTCTCTCCAGCTGAAGATGAAGCAATC CTGGTTGCTCATGCCAGATATGGTAACCGATGGGCCACCATTGCCAGGTTGCTTCCGGGTCGTACTGATAATGCGGTCAAGAACCACTGGAATTCCACGT TGAAGAGAAGGGCAAGACAACGCCAAAGTCAAATGAATTTGGAAGGCAACTTTGATAGTAATTATGGCAACAATTACGAATGCATTGATATTAATATGAC ACCAGGATCTATGGCAGATGGCATGGTGAGAGAGGAGGAGGATGCGTTGACAGCGTTGACTCTTGCGCCGCCGGGGATTGGTGGTGCAGTTTGTGGTAGC AATGGTGGAATGGTGGTGGAGAGGACGGCGGAGAGTTTGCCGGCTGGATTTTGGGATGTGATGAGGGATGTTATTGCAAGGGAAGTAAGGGAGTATGTGA GTTCTACACTATAA
AA sequence Show only first row Show all	>Potri.002G128900.1 pacid=42779032 polypeptide=Potri.002G128900.1.p locus=Potri.002G128900 ID=Potri.002G128900.1.v4.1 annot-version=v4.1 METMNMCSTSSSDSSASESSFNDNKTPRSTDKSARIKGPWSSEEDMILTGLVERHGPKNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSPAEDEAI LVAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRARQRQSQMNLEGNFDSNYGNNYECIDINMTPGSMADGMVREEEDALTALTLAPPGIGGAVCGS NGGMVVERTAESLPAGFWDVMRDVIAREVREYVSSTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G128900 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046700 [exp]	2.00	0.9902
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	3.16	0.9884
					Potri.003G071050 [exp]	3.87	0.9838
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.008G166700 [exp]	6.00	0.9822
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	6.32	0.9719
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	8.94	0.9779
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.008G052000 [exp]	9.64	0.9870
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Potri.001G110800 [exp]	14.59	0.9600
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.004G141200 [exp]	15.09	0.9645
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.005G078801 [exp]	15.29	0.9726

Compare expression of checked genes

Potri.002G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.