Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDE135.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26510 752 / 0 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT2G34190 595 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 593 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 512 / 6e-178 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 499 / 2e-172 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 489 / 7e-169 Xanthine/uracil permease family protein (.1) AT1G10540 485 / 4e-167 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 468 / 1e-160 Xanthine/uracil permease family protein (.1) AT1G65550 446 / 5e-152 Xanthine/uracil permease family protein (.1) AT5G25420 291 / 4e-93 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035800 [exp] 906 / 0 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.011G068200 [exp] 606 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 604 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 592 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.015G072600 [exp] 515 / 5e-179 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 508 / 3e-176 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 501 / 1e-173 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 497 / 6e-172 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 471 / 9e-162 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032758 [exp] 797 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10002787 [exp] 796 / 0 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10029238 [exp] 598 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 579 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 533 / 0 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 515 / 4e-179 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 497 / 2e-171 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 494 / 9e-171 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 494 / 1e-170 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 483 / 5e-166 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.002G129400.5 pacid=42777355 polypeptide=Potri.002G129400.5.p locus=Potri.002G129400 ID=Potri.002G129400.5.v4.1 annot-version=v4.1 ATGGGAGAAACAGCTCATAACCACCACCAGCCACCGCCACCACAAGCTGCGGCAGCAGCACCACCACCACCTCCACCATCACTTGCTTTGTCAAGAGGTC CTACTTGGACTCCTGCTGAGCAACTCCAGCAGCTCCATTACTGCATCCACTCCAATCCCTCTTGGCCTGAGACATGTCTGCTGGCTTTCGAACACTATAT TGTGATGCTTGGAACTACGGTCTTGATTGCACGTAATCTTGTGCCTCGAATGGGCGGGGACCCTGGTGATACTGCCCGTGTTATTCAAACGTTGCTGTTT ATGTCAGGAATCAATACACTGCTTCAAACAATCATTGGAACAAGGCTTCCGACGGTGATGGGTCCTTCGTATGCTTTTGTACTGCCAGTTTTATCAATCA TGAGAGATTACAATAATGAAACCTTCTCGAATGAGCATGATAGATTTGTAGACACTATGAGAACTATACAAGGATCATTGATTGTTTCTTCCTTTGCCAA CATCATTCTCGGGTTTAGCAAAGCATGGGGTAATTTGACAAGGTTCTTTAGTCCCATTACTGTCGCGCCTGTGGTTTGTGTAGTGGGTCTTGGTCTGTTT ATGAGGGGCTTTCCACTACTTGCCAACTGTGTGGAGATTGGCCTGCCTATGCTGATTCTGCTAATAATTTGTCAGTATTTGAAGTATCTACATCCCAGGG CCAACCCTGCAATTGAGAGGTTTGGCTTACTCGTCTGCGTTGGTATTATTTGGGCTTTTGCTGCTATCCTCACTGTTTCCGGTGCTTACAACAATGTGGG GCAGCAAACTAAACAGAGTTGCCGCACAGACCGATCGTATCTTATGTCATCTGCCTCATGGGTTAAAGTCCCATACCCCTTTCAATGGGGGGCGCCTATA TTCAGAGCAAGTCACGTCTTCGGGATGATTGGGGCAGCGCTTGTTTCATCTGCAGAGTCCACTGGAACCTTTTTTGCTGCAGCTCGGCTTGCGGGTGCTA CACACCCTCCTGCTCATGTTCTTAGCCGAAGTATTGGTCTGCAGGGTGTGAGCTTGTTGCTTGATGGAATTTTTGGTGCAGCTGTTGGTACCACTGCATC AGTTGAAAACGTTGGGCTTCTTGGACTCACACACGTAGGGAGCCGAAGAGTGGTGCAGATTTCAACTGCTTTCATGTTCTTTTTCTCCATCTTCGGCAAA TTTGGTGCCTTGTTTGCTTCTATTCCTCTGCCGATATTTGCTGCTATATACTGTGTTTTATTTGGGATTGTTGCTGCAATCGGTATTTCATTTATACAGT TTTCGAACAATAACTCCATGAGAAACCACTACATTTTGGGCATGGCTTTGTTCCTCGGGATATCGATACCACAATATTTTGTCAGCAACACCACTGGGGA TGGACATGGACCAGTTAGAACAAATGGTGGATGGTTTAATGACATATTGAACACACTTTTCTCATCCCCTCCAACGGTAGCAATGATTGTTGGGACATTG CTCGATAGCACACTGGAAGCAAGGCAGACTATCAATGACCGAGGAATTCCATGGTGGAAACCTTTCCAGAGCAGAAAGGGTGATGTTAGAACTGACGAGT TCTACAGTCTGCCCCTTAGGATAAATGAGTGGATGCCCACCAGATTTCTCTGA
AA sequence Show only first row Show all	>Potri.002G129400.5 pacid=42777355 polypeptide=Potri.002G129400.5.p locus=Potri.002G129400 ID=Potri.002G129400.5.v4.1 annot-version=v4.1 MGETAHNHHQPPPPQAAAAAPPPPPPSLALSRGPTWTPAEQLQQLHYCIHSNPSWPETCLLAFEHYIVMLGTTVLIARNLVPRMGGDPGDTARVIQTLLF MSGINTLLQTIIGTRLPTVMGPSYAFVLPVLSIMRDYNNETFSNEHDRFVDTMRTIQGSLIVSSFANIILGFSKAWGNLTRFFSPITVAPVVCVVGLGLF MRGFPLLANCVEIGLPMLILLIICQYLKYLHPRANPAIERFGLLVCVGIIWAFAAILTVSGAYNNVGQQTKQSCRTDRSYLMSSASWVKVPYPFQWGAPI FRASHVFGMIGAALVSSAESTGTFFAAARLAGATHPPAHVLSRSIGLQGVSLLLDGIFGAAVGTTASVENVGLLGLTHVGSRRVVQISTAFMFFFSIFGK FGALFASIPLPIFAAIYCVLFGIVAAIGISFIQFSNNNSMRNHYILGMALFLGISIPQYFVSNTTGDGHGPVRTNGGWFNDILNTLFSSPPTVAMIVGTL LDSTLEARQTINDRGIPWWKPFQSRKGDVRTDEFYSLPLRINEWMPTRFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.002G129400 [exp]	0	1	PDE135.2
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	4.89	0.7363
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	8.54	0.7736
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	12.64	0.7350
AT3G19240			Vacuolar import/degradation, V...		Potri.004G141300 [exp]	18.73	0.6820
AT3G50150			Plant protein of unknown funct...		Potri.016G039300 [exp]	18.73	0.7396
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088600 [exp]	21.16	0.7228
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	21.90	0.7012
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054601 [exp]	26.07	0.6978
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	27.22	0.7069
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	27.49	0.7061

Compare expression of checked genes

Potri.002G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.