Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60460 226 / 2e-72 MYB DUO1 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) AT4G26930 140 / 2e-38 MYB ATMYB97 myb domain protein 97 (.1) AT5G55020 137 / 8e-37 MYB ATMYB120 myb domain protein 120 (.1) AT2G32460 136 / 2e-36 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT3G11440 136 / 4e-36 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 135 / 4e-36 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 134 / 5e-36 MYB ATMYB81 myb domain protein 81 (.1) AT4G01680 127 / 6e-35 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G65230 128 / 1e-34 MYB ATMYB53 myb domain protein 53 (.1) AT3G27810 125 / 1e-34 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G054700 [exp] 477 / 1e-171 AT3G60460 266 / 3e-88 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Potri.013G130900 [exp] 146 / 2e-39 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 139 / 2e-37 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.003G189700 [exp] 139 / 5e-37 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 138 / 8e-37 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 134 / 2e-35 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 133 / 3e-35 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.003G094200 [exp] 130 / 3e-35 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.001G139900 [exp] 130 / 4e-35 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009780 [exp] 209 / 2e-66 AT3G60460 258 / 2e-85 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Lus10040063 [exp] 139 / 2e-37 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027189 [exp] 139 / 3e-37 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026142 [exp] 140 / 7e-37 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10008685 [exp] 139 / 1e-36 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10035275 [exp] 138 / 1e-36 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 138 / 2e-36 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10036103 [exp] 132 / 4e-35 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10020343 [exp] 129 / 5e-35 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10009522 [exp] 127 / 2e-34 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G140900.1 pacid=42778722 polypeptide=Potri.002G140900.1.p locus=Potri.002G140900 ID=Potri.002G140900.1.v4.1 annot-version=v4.1 ATGCCTAGTATCCGGAAAATGGAAGGATTTAAGAAGGAAGAAATAAGAAAAGGGCCATGGAAAGCAGAAGAAGATGAAGTGCTGATTATGCATGTTAAAA AATATGGTCCTAGAGATTGGAGCTCTATTCGGTCCAAAGGCCTTTTACAACGAACTGGCAAATCTTGTCGTCTTCGTTGGGTTAATAAGCTTAGACCCAA CTTGAAACACGGGTGCAAGTTTTCAGCCGAGGAAGAGAGGGTGGTGATAGATTTGCAGGCAGAATTTGGGAACAAATGGGCTAGAATCGCCACGTATTTG CCTGGAAGGACTGATAATGACGTGAAGAATTTCTGGAGTAGTAGACAGAAGAGGCTGGCTAGGATTTTGCAGACTTCAGGAACACCTTCCTCTTCTAATT CCAGGCCACAGAAGAGTAAATATGAAGTTCCCGTCTTTCAAGATGTTCCCACTTTGGAGGCTCCAATGTTCAGTTCTTCAATGGAGGAAGAGTCATCCTC GAAGGCTTGTTCATCATCCTACTTGGATAACCCTGAACATATAAGAATGATGCCATTACCGTCTCTGGTTAAGACTGATTTTCCAGACGGTTATGCAAAT CTTGGTCAGTATGAGCCCCTGTCAACGATTCCCTTCCCTCAGATCCCACAGCCCCAACCAGGCCTTTTATTCTCACCAGAAAGCCATGAGCTCCTGGCTA GGCTGGATGACCCTTACTTTCTCAATGTGCTTGGAACCGCAGATGCTCCTGAACTTGGAGATGCAGCACAATTTTCACTTGGGCCTCCATTGTTTGATCC AGTATCAAGTTGTATGAATAGTGCAACGGATGTGAAGAATCATGTGACCCCAGATACCCTCTTCGATGAGTTTCCATCAGACATGTTTGATCATATTGAA CCGCTTCCAAGTCCTTCAGAGTGGTGA
AA sequence Show only first row Show all	>Potri.002G140900.1 pacid=42778722 polypeptide=Potri.002G140900.1.p locus=Potri.002G140900 ID=Potri.002G140900.1.v4.1 annot-version=v4.1 MPSIRKMEGFKKEEIRKGPWKAEEDEVLIMHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKHGCKFSAEEERVVIDLQAEFGNKWARIATYL PGRTDNDVKNFWSSRQKRLARILQTSGTPSSSNSRPQKSKYEVPVFQDVPTLEAPMFSSSMEEESSSKACSSSYLDNPEHIRMMPLPSLVKTDFPDGYAN LGQYEPLSTIPFPQIPQPQPGLLFSPESHELLARLDDPYFLNVLGTADAPELGDAAQFSLGPPLFDPVSSCMNSATDVKNHVTPDTLFDEFPSDMFDHIE PLPSPSEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.002G140900 [exp]	0	1
AT5G45660			unknown protein		Potri.011G076600 [exp]	2.23	0.8676
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	8.36	0.8007
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	10.39	0.7793
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G189400 [exp]	11.35	0.7353
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	12.12	0.7269
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	12.84	0.7481
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	14.28	0.7166
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	18.49	0.7413
					Potri.010G031250 [exp]	22.73	0.7804
					Potri.011G144433 [exp]	23.23	0.7520

Compare expression of checked genes

Potri.002G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.