Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00150 437 / 1e-145 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT2G45160 364 / 2e-116 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT3G60630 363 / 5e-116 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT4G36710 189 / 1e-52 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT2G01570 129 / 4e-31 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G66770 128 / 7e-31 GRAS GRAS family transcription factor (.1) AT2G04890 120 / 5e-29 GRAS SCL21 SCARECROW-like 21 (.1) AT1G14920 120 / 2e-28 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 120 / 2e-28 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 119 / 3e-28 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G144200 [exp] 1056 / 0 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 964 / 0 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 961 / 0 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G122800 [exp] 469 / 5e-155 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.003G110800 [exp] 454 / 2e-149 AT4G00150 366 / 2e-117 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.007G029200 [exp] 191 / 1e-52 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.005G125800 [exp] 184 / 3e-50 AT4G36710 466 / 1e-160 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.010G110700 [exp] 135 / 6e-33 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 133 / 3e-32 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004353 [exp] 426 / 8e-139 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10028934 [exp] 425 / 2e-138 AT4G00150 397 / 7e-130 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10024029 [exp] 180 / 1e-48 AT4G36710 452 / 4e-155 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10041721 [exp] 179 / 3e-48 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10012554 [exp] 134 / 3e-32 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10017758 [exp] 130 / 1e-31 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 131 / 2e-31 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10016496 [exp] 127 / 5e-30 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 125 / 2e-29 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10024014 [exp] 122 / 7e-29 AT5G66770 590 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.002G144700.2 pacid=42779997 polypeptide=Potri.002G144700.2.p locus=Potri.002G144700 ID=Potri.002G144700.2.v4.1 annot-version=v4.1 ATGAAGGCCATGCCCTTACCCTTTGAGGACTTTCAAGCGAAGGGGCTGTTGGGTTTCTCTTCTTATTCTTCTTCCTCTCCAGATCCATTCCATCAACACC ACCACAAGTGGCAAAACAACAACAGCAAAGAAAGTTGTGGTTTTCTTGTGGGCAGTACTGAGCCCACATCTGTGCTTGACACAATAAGCAGACAAAGCCC GCCAACATCCTCCTCAACACTGTCTTCTTCTCAAGGCGGAGGAGGTGGTGGCGGAGGAGCCTCCACCGACACCACCAACGGCGCGGCAGGTGCTGGTGGA AGCAGCCCTAGTGTAGATGAAAAATGCGGACCGCAACTTGGAATGGAGGACTGGGAGAGTGTGTTGTCAGGGTCTCCTATTCAAGAACAGTCCATATTAA GGTTAATTATGGGTGATATCGAGGACCCATCTTTAGGACTTTACAAGCTGTTACAAAGTGGAAGTAGGTCTCAAGATATGGAGCTTAATGCATCAGGTTT CGGTGCAGTAGATCAAGTTTTTGGCTTTGAAGTACCCAATATGAGTACAGCAAGTGCCAACTTGGCTGTCAACCACAACAATTTTGACCCTTCTTCAATC CATGGTACTTCTCCTGATTTCCCTCTCGTTAACCTCAAAGCTACTATAAGTTTTAATATTGGTTGTGTACTTAACCAAAATCCAACACCAAATCCTGTTT TGTTTACTTCAGGGATCAATCTTTTGCCAGGTTTGTTTCAGCAACACCACCAGCAGGCAGCATTTGATCAAGACGAGAAGCCTCAGATTTTGAATCCAGG GGCGATGATCAACCAAAATCAACATCAGTTTGTGCAAAACCCAGCTATGCTTTTGCCATTGTCATATGCACAATTAGAAGAGCATCATAAAAACCTGCAT TCCTTATCACCACCGCCATTGAAAAGGCTGAATACTGGGCCTGTTGGAGCCAATCATGTGCCCAAAGTCTTTGATTTGAGGCCTCCAGAATTGTTTCTTC CCCGACAGCAGCAGCAGAATCATCAGTTTCAAATGACGCAGCATCAAAGGCAGGGAATGATTACGAAGCAGAAAATTGCAAGTGATGAATTGGCAAACCA GCAGCAGCTTCAACAGGCAATAATAAACCCGATATGTCAAGCAGCAGAGCTGATCGAAACTGGGAATCCGGTACTTGCGCAAGGGATATTGGCGCGGCTC AATCACCAGCTCTCTGTTCCAATCGGTAAGCCTTATCAAAGGACTGCCTTTTACTTCAAGGAGGCCTTGCAGTTACTTCTCAATATGAACAATAACAACT CTATTGGTACTGCTTGTAACCTGATTTTCAAGATTGGTGCTTATAAATCCTTCTCTGAGATCTCACCGATCCTTCAGTTTGCGAGTTTTACTTGTAACCA AGCCCTTCTTGAGGCTTTTGAGGGGTTTGAGAGAATTCACGTTGTTGATTTTGATATTGGGTATGGTGGGCAGTGGGCTTCTCTTATGCAAGAGCTGGCT TTGAGGAATGGAGGTGCCCCATCTCTTAAAATCACCGCTTTTGCTTCTCCTTCTTCACATGATGAACTTGAGCTTGGTTTCACTCAAGAAAATTTAAAAA TGTTTGCAAGTGAAATCAACATGCCATTTGAGATTGAAATTTTAAGCCTTGAATCCTTGAGCTCTGGTTCTTGGCCAATGCCTCTCCGCCTAACAGAAAA GGAAGTAATTGCTGTCAATCTTCCAGTTGGCTCCTTTTCAAATTACCCATCAACTCTTCCTTTGGTGCTTCGCTTTGTGAAACAGCTCTTGCCCAAAGTT GTGGTCTCTTTGGACAGAGGCTGTGACCGAAGCGACCTCCCATTTGCACACCATGTAAATCACGCCATTCAATCTTATACAAGCCTGCTTGAATCACTGG ATGCCGTGAATGTGAATTTAGATGCAGTGCAAAAGATTGAGAGGTTTTTGGTCCAACCAGGCATTGAAAAAACAGTACTGGGTCGGCATAGCTGCCCTGA TAGGACTCCTCCTTGGAGAAGTCTGTTTTTGCAGTCTGGTTTTACTCCATTGACTTTCAGCAACTTTACCGAGTCACAGGCTGAGTATTTAGTGCAACGT ACTCCAGTTAGGGGTTTCCATGTTGAAAAGAGGCAATCTTCGCTTGTTCTTTGCTGGCAACATAAGGACCTCGTTTCAGCTTCTGCTTGGAGGTGTTAA
AA sequence Show only first row Show all	>Potri.002G144700.2 pacid=42779997 polypeptide=Potri.002G144700.2.p locus=Potri.002G144700 ID=Potri.002G144700.2.v4.1 annot-version=v4.1 MKAMPLPFEDFQAKGLLGFSSYSSSSPDPFHQHHHKWQNNNSKESCGFLVGSTEPTSVLDTISRQSPPTSSSTLSSSQGGGGGGGGASTDTTNGAAGAGG SSPSVDEKCGPQLGMEDWESVLSGSPIQEQSILRLIMGDIEDPSLGLYKLLQSGSRSQDMELNASGFGAVDQVFGFEVPNMSTASANLAVNHNNFDPSSI HGTSPDFPLVNLKATISFNIGCVLNQNPTPNPVLFTSGINLLPGLFQQHHQQAAFDQDEKPQILNPGAMINQNQHQFVQNPAMLLPLSYAQLEEHHKNLH SLSPPPLKRLNTGPVGANHVPKVFDLRPPELFLPRQQQQNHQFQMTQHQRQGMITKQKIASDELANQQQLQQAIINPICQAAELIETGNPVLAQGILARL NHQLSVPIGKPYQRTAFYFKEALQLLLNMNNNNSIGTACNLIFKIGAYKSFSEISPILQFASFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELA LRNGGAPSLKITAFASPSSHDELELGFTQENLKMFASEINMPFEIEILSLESLSSGSWPMPLRLTEKEVIAVNLPVGSFSNYPSTLPLVLRFVKQLLPKV VVSLDRGCDRSDLPFAHHVNHAIQSYTSLLESLDAVNVNLDAVQKIERFLVQPGIEKTVLGRHSCPDRTPPWRSLFLQSGFTPLTFSNFTESQAEYLVQR TPVRGFHVEKRQSSLVLCWQHKDLVSASAWRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	0	1
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	1.41	0.9165	Pt-DEGP2.2
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	1.73	0.9065
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060500 [exp]	2.23	0.9036
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	2.44	0.8969
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	2.82	0.9120
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	5.74	0.8614
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	7.07	0.8828
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	7.48	0.8668	Pt-GLUR2.1
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	12.72	0.8847
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	13.85	0.8631

Compare expression of checked genes

Potri.002G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.