Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 97 / 8e-25 AtENODL18 early nodulin-like protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072700 [exp] 249 / 5e-84 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.001G273000 [exp] 102 / 2e-26 AT1G08500 213 / 1e-69 early nodulin-like protein 18 (.1) Potri.009G067300 [exp] 94 / 1e-23 AT1G08500 207 / 2e-67 early nodulin-like protein 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009231 [exp] 166 / 3e-50 AT1G08500 117 / 4e-31 early nodulin-like protein 18 (.1) Lus10037998 [exp] 153 / 1e-46 AT1G08500 101 / 1e-26 early nodulin-like protein 18 (.1) Lus10036067 [exp] 92 / 3e-22 AT1G08500 221 / 1e-72 early nodulin-like protein 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G150600.1 pacid=42779486 polypeptide=Potri.002G150600.1.p locus=Potri.002G150600 ID=Potri.002G150600.1.v4.1 annot-version=v4.1 ATGAGACTAGCCACCATTCTGCATCTCGCCATCATTGCCGTCCTGATCACCGCCGCCACGTCCCAGGCTCCTCCCATTAGATACATCAACCACACCGTTG GCGACAATGCCGGCTGGTTCTTCAATTCCACCACCAACACCACTGCCGCTAACTACTCCTCTTGGGCTGCCTCCCAAACCTTCAATCTCGGCGACTATCT TATTTTCAGAACGAGCTCCAATCAGACAGTGATCCAGACCTACAATCTGACAACATTCAAAGACTGCTCAATCGACCACTCGTCTGATAACGATACGGTT GTCTACAACGGAGGCAACACGGTGTTCGATCAAGCGTTGACCATACCAGTACCGTTGACTATTCAAGGTCCGAATTATTTCTTCTCTGATGCTAATGATG GCATTCAATGCCAGTACGGATTGGCCTTTGAGATCAACGTCAATCGCGGCCTTGGATTGCCTCCCAGTCTTAATCAGCCGCCTCCTCCTCCGTACAGGGA GCCTCCCGGTCCTGACTCGGCTTCTCCTCCAATTACTATTCCTGCCGGAGGAAAAGGGCTAGGAAATGAGGGGTTTAAAAATGGGTTAAGCGTGCACGTG ATTGCGTGTGCGGTTTTATTTGCTTTGCTGGCAGTCAACGGTGGGATAGGGGTGGTGTTTTCTTAA
AA sequence Show only first row Show all	>Potri.002G150600.1 pacid=42779486 polypeptide=Potri.002G150600.1.p locus=Potri.002G150600 ID=Potri.002G150600.1.v4.1 annot-version=v4.1 MRLATILHLAIIAVLITAATSQAPPIRYINHTVGDNAGWFFNSTTNTTAANYSSWAASQTFNLGDYLIFRTSSNQTVIQTYNLTTFKDCSIDHSSDNDTV VYNGGNTVFDQALTIPVPLTIQGPNYFFSDANDGIQCQYGLAFEINVNRGLGLPPSLNQPPPPPYREPPGPDSASPPITIPAGGKGLGNEGFKNGLSVHV IACAVLFALLAVNGGIGVVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.002G150600 [exp]	0	1
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	3.46	0.9772
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	7.07	0.9627
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	8.48	0.9627
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	10.48	0.9707
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	10.90	0.9605
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	11.74	0.9699
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	12.36	0.9542
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	13.41	0.9580
AT1G14550			Peroxidase superfamily protein...		Potri.008G022232 [exp]	14.42	0.9549
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048400 [exp]	17.14	0.9567

Compare expression of checked genes

Potri.002G150600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.