Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16110 179 / 4e-49 GARP ARR2 response regulator 2 (.1) AT3G16857 173 / 5e-47 GARP ARR1 response regulator 1 (.1.2) AT2G01760 163 / 2e-45 GARP ARR14 response regulator 14 (.1) AT4G31920 160 / 7e-43 GARP ARR10 response regulator 10 (.1) AT2G25180 155 / 5e-41 GARP ARR12 response regulator 12 (.1) AT1G67710 149 / 2e-39 GARP ARR11 response regulator 11 (.1) AT5G58080 132 / 1e-32 GARP ARR18 response regulator 18 (.1) AT5G49240 125 / 2e-32 GARP APRR4 pseudo-response regulator 4 (.1) AT5G07210 99 / 7e-22 GARP ARR21 response regulator 21 (.1) AT2G27070 99 / 1e-21 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077200 [exp] 695 / 0 AT4G16110 181 / 1e-49 response regulator 2 (.1) Potri.008G135500 [exp] 192 / 8e-54 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 188 / 2e-52 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G001000 [exp] 179 / 3e-49 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 179 / 4e-49 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G111300 [exp] 172 / 1e-46 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 167 / 7e-45 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.010G053100 [exp] 164 / 2e-44 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.018G021300 [exp] 155 / 1e-40 AT2G25180 364 / 2e-117 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016846 [exp] 182 / 3e-50 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 181 / 1e-49 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 164 / 3e-45 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 163 / 4e-45 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10005340 [exp] 162 / 2e-43 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 159 / 3e-42 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 149 / 7e-39 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10015848 [exp] 141 / 1e-37 AT3G16857 117 / 7e-29 response regulator 1 (.1.2) Lus10036303 [exp] 143 / 7e-37 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10027416 [exp] 140 / 8e-36 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G152900.1 pacid=42779435 polypeptide=Potri.002G152900.1.p locus=Potri.002G152900 ID=Potri.002G152900.1.v4.1 annot-version=v4.1 ATGCAGACATCCTATATTTTACAGCAGAAGCATATCTATCTGAGTCTCCCTCTCTGTGCCTGTCAAATTGTCCCTCTCTCCCCTGTAGGTTCTGTTCCAG ACATGACTAGTGAGCAGTTTCTCTCAGTTGAAGTTACAAAAAATAATGCTAGCTCATTTGCTGAAGGTGTTAGAATCTTGGTTGTGGAAAGTGATCCTAC ATGCCTCAGAATTGTGTCAAAAATGCTTCAGGCATTTGGATATGAAGTTACAACTGCTACACGAGCCACTGATGCATTGCACATTTTACGGGAGAAAGAA GATGAAATTAACCTTATTCTGATAGAAACTCACTTGCCTGATATGGATCAATATGAGATCATTGAGACAGTGAGAGCAATGTCTTCTTCTTTGCCCATTG TCGTTTTTTCAGCTGATAACAATGTGAGTGCCATGTTAGGCTGGCTGTATAAAGGGGCTGCACTTTATCTTATGAAGCCAATCGTCAAGGATGATGTAAA AAACCTTTGGCAGTTAACATATAGAAAGAAAAAAAAGACAGCTGTATCTAGCGTAGGATCAAACAGCTTTCATGCTGGGTTGGCAGAGGAGAATGCTTCA AGTGTGACCGCAGGGATCCCATCACTCTTAAGTACCACGGGGCAGAGTGACCAAATGGGAAAAAGAAAGGAGCTAGAAGAGACAGATAACGATGATGAAG ATAATGACAATTTGACTGTTCTAAAGAAGCCAGAGCTTGTTTGGACTAATGAGCTGCATAACAGATTCTTGCAAGCTATCAGGATATTAGGCGTTGATGG TGCCCATCCTAAGAAAATACTTCAGCACATGAATGTCTCGGGGCTAAAGAAAGAAAATGTTTCAAGCCATTTACAGAAATATCGTCTTTCCTTGAAGCGG GAACAAGATACAACACAGAAGACCATGATTAGAGATCACCATCCTTCATTGACTTTGAATTTACAAGGAGGGTTTTCTCAATTCACAAACCCGCAATTCT TCATGGCAATATCTCAATCAGAACACAGAAACAATATCCAGAATAATCTCTGTAGTCCTGTGTCAATGCATTCCCTTTTTTCTGCACATTCTCTTACTCG AGTGAACACAAACTATGATGGCATGTTGATTCCTAGCTATGGGCAACAAAGCAAACAGCTAGACCGTACTTACCCCAATTGCAGTCATACTGGAATTGGG ACTACTAATGATGGGAACTTTGCAAGTTTAGGACAGAAAGGAAATCATAATGTGGAAGAACATCTCAATCAAGGAACCACTTTCTCCAATGTCGGAACTC ATGGCCCAACATTTCTGGGCAACTCTCAGCAGCAGCTGCAGTTTCCACTGCTACAACCTCAACCACTTCCAGAGAAGGAAGATGAATCTGACATTCCCAA TATCGTAACAGAGGCAAGGAATGAGTTGTTGGTGATGAAAAATGAGTTCCTTGACTATCCTAATAATGATCTCTGGCTCTGA
AA sequence Show only first row Show all	>Potri.002G152900.1 pacid=42779435 polypeptide=Potri.002G152900.1.p locus=Potri.002G152900 ID=Potri.002G152900.1.v4.1 annot-version=v4.1 MQTSYILQQKHIYLSLPLCACQIVPLSPVGSVPDMTSEQFLSVEVTKNNASSFAEGVRILVVESDPTCLRIVSKMLQAFGYEVTTATRATDALHILREKE DEINLILIETHLPDMDQYEIIETVRAMSSSLPIVVFSADNNVSAMLGWLYKGAALYLMKPIVKDDVKNLWQLTYRKKKKTAVSSVGSNSFHAGLAEENAS SVTAGIPSLLSTTGQSDQMGKRKELEETDNDDEDNDNLTVLKKPELVWTNELHNRFLQAIRILGVDGAHPKKILQHMNVSGLKKENVSSHLQKYRLSLKR EQDTTQKTMIRDHHPSLTLNLQGGFSQFTNPQFFMAISQSEHRNNIQNNLCSPVSMHSLFSAHSLTRVNTNYDGMLIPSYGQQSKQLDRTYPNCSHTGIG TTNDGNFASLGQKGNHNVEEHLNQGTTFSNVGTHGPTFLGNSQQQLQFPLLQPQPLPEKEDESDIPNIVTEARNELLVMKNEFLDYPNNDLWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	3.00	0.8149
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Potri.012G060400 [exp]	3.74	0.7965
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	5.65	0.7730
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	7.93	0.7552
AT1G02960			unknown protein		Potri.002G208058 [exp]	9.48	0.7813
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	10.24	0.7093
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.014G000700 [exp]	11.48	0.7340
AT1G13810			Restriction endonuclease, type...		Potri.010G222500 [exp]	15.96	0.7178
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	16.91	0.7356	SDG916,Pt-CLF.2
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	16.97	0.7456

Compare expression of checked genes

Potri.002G152900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.