Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 348 / 7e-121 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 343 / 1e-118 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 336 / 6e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 199 / 4e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 171 / 4e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 169 / 3e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 57 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 57 / 4e-09 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 57 / 4e-09 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 57 / 4e-09 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156300 [exp] 603 / 0 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 601 / 0 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 540 / 0 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 479 / 2e-172 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 393 / 2e-138 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 324 / 3e-111 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 305 / 1e-103 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 264 / 6e-87 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 249 / 7e-83 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014688 [exp] 336 / 7e-116 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 334 / 4e-115 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 327 / 2e-112 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 325 / 3e-111 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 323 / 8e-111 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 330 / 3e-110 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 318 / 8e-109 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 315 / 2e-107 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 313 / 9e-107 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 270 / 1e-89 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.002G156600.1 pacid=42779370 polypeptide=Potri.002G156600.1.p locus=Potri.002G156600 ID=Potri.002G156600.1.v4.1 annot-version=v4.1 ATGGCTCAAGAGTCCACCAGTCTTGCAACAAAGAGGTATGCAGTTGTGACAGGAGCAAACAAGGGGATTGGATATGAAATATGTAGGCAGTTGGCTTCTA ATGGGATTTTGGTGGTGTTGACAGCCAGAGATGAAAAAAGGGGTCTTGAAGCTGTTCAAAATCTGAAAGATTCTGGCATCTCTGATGACCTTGTGATTTA CCATCAACTTGATGTGGTTGACCCTGATAGCATTGTTTCCCTTGCTGAATTTGTGAAAAATAATTTTGGAAAACTTGACATCTTGGTGAACAATGCTGGG ATTGGTGGAGTTGCACTAGAGGCAGATGCTTTTCAAAGAGCCTTTGAACAAGCTGGTGAATTTCCATCTGGGGAGCAAGTGTGGGCTGAAATTGGAACTC AAAATTATGAGATGGCAGAACAATGTGTGAAAACAAACTACTATGGTGCAAGAGGAATGGCCGAAGCACTTGCGCCCCTCCTACAGTTGTCTGATTCACC AAGAATTGTAAATGTCTCTTCAATGCTGGGGCTTTTAAAGAACATACCCAATGAATGGGCCAAAGAATTGTTGAATGATGTTGAAAATCTCAATGAAGAT AGACTAGACGAGGTTGTGAACGGGTTTCTTAAAGATTTTAAAGAAGATTTGTTGGGATCCAAAGGCTGGCCAACTTATCTGTCTGCCTATATTGTTGCTA AAGCTGCCATGAGTGCCTATACAAGGATTCTGGCCAAGAAGTATCCAAGCTTCTGCGTCAATTGTCTCTGCCCTGGCCATTGCAAAACTGACATAACTAC CAACATCGGCCCCTTCACCGCTGCCGAAGGAGCCGAAAATGCTGTGAGATTGGCATTGCTGCCTGATGGTGGGCCTTCTGGTTTTTTCTTTTATCAGAAA GAAATGCTACCGTACTTTTGA
AA sequence Show only first row Show all	>Potri.002G156600.1 pacid=42779370 polypeptide=Potri.002G156600.1.p locus=Potri.002G156600 ID=Potri.002G156600.1.v4.1 annot-version=v4.1 MAQESTSLATKRYAVVTGANKGIGYEICRQLASNGILVVLTARDEKRGLEAVQNLKDSGISDDLVIYHQLDVVDPDSIVSLAEFVKNNFGKLDILVNNAG IGGVALEADAFQRAFEQAGEFPSGEQVWAEIGTQNYEMAEQCVKTNYYGARGMAEALAPLLQLSDSPRIVNVSSMLGLLKNIPNEWAKELLNDVENLNED RLDEVVNGFLKDFKEDLLGSKGWPTYLSAYIVAKAAMSAYTRILAKKYPSFCVNCLCPGHCKTDITTNIGPFTAAEGAENAVRLALLPDGGPSGFFFYQK EMLPYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156600 [exp]	0	1
					Potri.001G472101 [exp]	5.91	0.8858
					Potri.016G047700 [exp]	9.38	0.8816
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	10.00	0.8620
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	10.77	0.8787
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	13.60	0.8742	PSCLRR52.53
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	17.83	0.8700
AT3G02720			Class I glutamine amidotransfe...		Potri.004G075900 [exp]	20.83	0.8587
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G041268 [exp]	21.00	0.8689
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103600 [exp]	21.07	0.8612
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067900 [exp]	22.64	0.8460	Pt-ACTI.1

Compare expression of checked genes

Potri.002G156600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.