Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01280 266 / 2e-87 MYB Homeodomain-like superfamily protein (.1.2) AT5G52660 259 / 2e-84 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 248 / 1e-80 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 223 / 7e-71 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 202 / 4e-63 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G17300 102 / 5e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 99 / 1e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT2G46830 100 / 4e-23 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 98 / 4e-22 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT1G18330 96 / 4e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089300 [exp] 483 / 3e-172 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 297 / 2e-99 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 291 / 4e-97 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 235 / 3e-75 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 216 / 1e-67 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 103 / 3e-24 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 102 / 9e-24 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 102 / 1e-23 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.002G180800 [exp] 101 / 4e-23 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007914 [exp] 334 / 2e-113 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 314 / 7e-106 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 268 / 2e-88 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 267 / 9e-87 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 228 / 7e-71 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 203 / 6e-62 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 199 / 1e-59 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 119 / 3e-31 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10031322 [exp] 100 / 4e-23 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 99 / 6e-23 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G163100.1 pacid=42777063 polypeptide=Potri.002G163100.1.p locus=Potri.002G163100 ID=Potri.002G163100.1.v4.1 annot-version=v4.1 ATGGTGTCGGTTAACCCTAACCCGGCTCAAGGCTTTTATTTCTTTGATCCCATGAATAATAGTAATATGGGGTTACCCGGTCTCGATTCCCTGCCACCAC CACCAACAACAACGGCAGCAACACCATCCAATACTGCTACTGCTACTGCTACTAATACTTGTAAAAATACAGTTTCGACGGTAAATACTAATAATAATCA TAATAATACGGTGATGTCGTTCTCGGAGGATTCGAGTAAGAAGATCCGGAAACCTTATACTATTACTAAGTCTAGAGAGAGCTGGACTGAACAGGAGCAT GACAAGTTTCTAGAAGCCCTCCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAGACTGTCATACAGATACGGAGTCATGCAC AAAAGTACTTTCTGAAGGTTCAGAAGAGTGGAACAAGTGAACATGTACCTCCACCTCGTCCAAAGAGAAAAGCAGCTCATCCCTACCCGCAAAAGGCTTC TAAAAGTGCTGTTGTTGCATCACAAGCGACTGGGCTATTTCAATCTTCATCTACTTTGCTTGAACCTGGATATCTCTATCGGCCAGATACAACATCAGAT CTTGGAAATCCAATTACCAGTGGATCTTCATCTACCTGGAGTTATAACTCTGGACCACCAGTGAACATGTCACAGATGACTACAGATGATGCGGGATTGG CTGGGCCAACAATTTCATATAAATGTTGCTACAGTAGCAGTAATGAAAGCACCCCAAGGACTTGGCAAGCTGGCAAAATAATTGATAATAAGGATCAGGG CAAGCCAGAGAGAGTTATGCCAGACTTTGCTCAAGTGTACAGCTTCATTGGAAGTGTCTTTGACCCCAATGCCAGGGATCACTTGCAGAGGTTGAAGCAG ATGGACCCAATAAATTTGGAAACAGTGGTGTTGTTGATGAGGAACCTCTCTGTCAATTTGACAAGTCCAGAATTCGAGGATCATAGAAGGCTGCTTGCTT CGTATGATGTTGACTCTGAGAAAGAAAACTCAGGTGGTTCTTACAGCAATTGCAGTGTTGATAATTTGGGCAACCCCATTCCAGCTATGTAA
AA sequence Show only first row Show all	>Potri.002G163100.1 pacid=42777063 polypeptide=Potri.002G163100.1.p locus=Potri.002G163100 ID=Potri.002G163100.1.v4.1 annot-version=v4.1 MVSVNPNPAQGFYFFDPMNNSNMGLPGLDSLPPPPTTTAATPSNTATATATNTCKNTVSTVNTNNNHNNTVMSFSEDSSKKIRKPYTITKSRESWTEQEH DKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKASKSAVVASQATGLFQSSSTLLEPGYLYRPDTTSD LGNPITSGSSSTWSYNSGPPVNMSQMTTDDAGLAGPTISYKCCYSSSNESTPRTWQAGKIIDNKDQGKPERVMPDFAQVYSFIGSVFDPNARDHLQRLKQ MDPINLETVVLLMRNLSVNLTSPEFEDHRRLLASYDVDSEKENSGGSYSNCSVDNLGNPIPAM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	0	1
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	2.23	0.8512
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	5.65	0.8556	APK2.1
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	6.63	0.8593
AT3G29270			RING/U-box superfamily protein...		Potri.004G125400 [exp]	6.92	0.8429
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103400 [exp]	8.48	0.8415
AT3G26990			ENTH/VHS family protein (.1)		Potri.001G325700 [exp]	9.16	0.8525
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	9.48	0.8414
AT1G03910			unknown protein		Potri.006G118700 [exp]	11.53	0.8445
AT1G25370			Protein of unknown function (D...		Potri.008G122600 [exp]	12.40	0.8216
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	13.96	0.8315

Compare expression of checked genes

Potri.002G163100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.